Protein

View in Explore
Genbank accession
APD21560.1 [GenBank]
Protein name
PblB
RBP type
TF
Evidence RBPdetect2
Probability 0,78
Protein sequence
MLYLLNKDVRTVRWNGEPLHEATSAIVKETMNGDFTLTVKYPISDSGIYQLIQEDMLIKAPTPVLGAQLFRIKKPVEHNDHLEITAYHISDDVMQRSITQMSVTSQSCGMALSRMVQNTKTALGDFSFNSDIQDRRTFNTTETETLYSVLLDGKHSIAGTWEGELVRDNFAMTVKKSRGENRGVVITTHKNLKDYQRTKNSQNVVTRIHARSTFKPEGVEKETTIRVTVDSPLINSYPYINEKEYENNNAKSVEELQKWAQAKFSNEGIDKISDAIKIEAYELDGQVVHMGDTVNLKSWKHNVDAFKKAIAYEFDALKEEYISLTFDDKAGAGGSRTSGGLSSAADAILGVTESAQEIALEKALQNADLDFDHKAGLLRQEISDGIELARARAEEVKQKLSDTINQRFNSFDNGPLKEVKRKAEEALRNAGASTLLAQEAKRIGLDSVARLEAFKSQTTSAQTALSGDLDALKRTIVNDIRPKQAQAETEIAKQVEALSRTKNELAGASTLFAQEAKRIELDSVARLEAFKLQTTSAQTALSGDLDVLKRTIANDIRPKQAQAEAEIAKQVEALSRTKNELAGVKSAQATYEETTTRRLSELTNLANGKASKSELTQTAEELASRIASVQVGGINLLRNTASLLIGDRSKGCWMSSSGGNGRAISVEVLAPPKKMIKNMIRVIENTNGGNKDLTQLVRLRIGEKYTISCYARVASDSPNANVNLLFRSWANNTDLNRKFQKSISHKNWQKYSFTFTADAIENSIQFGQSGAGIIEICAPKIESGTLATDYSEAPEDIEGQISTVESTFKQRADSLEAGVSRLTEGLRTKADISSLNVTAENIRQSVKSLETDTQNKLNQKLSQAEFEVRAGSIRQEILNATKDKASKSELTQTAEELASKIASVQASGRNLFLNSLFKQDISKTGIWTTSTYTATIDSESKYLGHKALKIIGLNPSGRDGGNPKVTYPALGQFGKVIPGSTTNQDVTISFYAKANKNGIMLRSRLGNIGYKTGNVTLSTEIKRYVVHIPKGWTNESKRTTNEWLFNFNQEGTVWIWMPKFEISDVDTSYSEAPEDIEGQISTVESNFKQRADSLEAGVRSLTEGLRTKADISALNVTAENIRQSVKSLETDTQNKLNQKLSQAEFEVRAGSIRQEILNATKDKADKTLVVAEAGKLREEFSKMKVGGRNLWIKSKMVGAVIEKLPENHVTGQKECYRLENNSTLTFNIEPDFSSRLYQKVTFSAWIKYENVVQGRNFWNVFNCFKHYLFRKNSETGVQSGPDYATLGMYKGSADWKYITFTYDYSEKTNFDQLKTSLRFNLEGATSGTAWVTGIKVEIGSVATDWSPAPEDADGLITEAKATFERTAQGLRTDLSAIQEYVNKDGQRQEALQRYTREESARQATAVRELVNRDFVGKATYQEDVKGINQRIEAVKTSANKDIASQIASYRQSVDGKFTDISSQITTYKQDVGGQISGLSNRLTSSEQGTTTQISNLSNRINSNKQGADNQISNLKTQVATNKDNAERQMGRISDQVSANKANADSQFANVTNQLARKVETTDFQRVKETSKLYERILGNTENGIADKVARMALTNQLFQVEVGKYSVSGPNLIKNSDFKNATNEWGSTQNLGRLVKHSFYHNGQKDLMRLSNATKNENFLYSHRFNLERNTDYVLNFRGFNNSALASYDVYILGRRAGESDGFTIVKKVVSSKKLSTSRCEDVSVTFNSGEMDNAYIRFDNNGSSSGTADLYITEVDLYKGYKPRTWQPHPEDAVADANKKLEATQTKMTLLTGSWAVQNINSAGDIISGINLGANGHNRFVGKLTHITGETLIDRAVIKSAMVDKLKTGNFEAGSVTTTILDAEAVTAEKVRFDDAFIRKMTANDAFIDQLTSKRIFSTKVESVISSSTFLEAYQGRIGGFTLGQFDQGGGRWISGVNQFSVGMGNGAGYGVRTAFWANWGNNWNYAGPKAWNVNTDGKMYCRNEVGFYDQVDFSNSSRANFYGNTTFSRSPVFSNGIELGSKDVLGDGWNPKGGRNAVVWWNQVGSGSVKYWMEQKSDRRLKENITDTAVKALDKINRLRMVAFDFIENKKHEEIGLIAQEAETIVPRIVSRDPENPDGYLHIDYTALVPYLIKAIQELNQKIEKMEKTIA
Physico‐chemical
properties
protein length:2153 AA
molecular weight: 238921,69320 Da
isoelectric point:8,57044
aromaticity:0,07710
hydropathy:-0,54046

Domains

Domains [InterPro]
DC_1274
ATT
1–642
DC_1274 G3DSA:2.60.120.260 Coil DC_0720 DC_0720
IPR007119
Unmapped
28–326
IPR007119 Coil Coil Coil IPR008979 Coil G3DSA:2.60.120.260 G3DSA:2.60.120.260 IPR030392
DC_0720
STR
712–944
DC_0720 IPR030392
DC_0976
RBD
2109–2153
DC_0976
APD21560.1
1 2153
Architecture
ATT
STR
STR
RBD
ATT 1-642 | STR 653-1362 | STR 1454-2121 | RBD 2122-2153
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Streptococcus phage IPP5
[NCBI] 		1916187 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Streptococcus pneumoniae
[NCBI] 		1313 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
APD21560.1 [NCBI]
Genbank nucleotide accession
KY065449 [NCBI]
CDS location
range 24780 -> 31241
strand +
CDS
TTGCTTTATCTACTTAATAAAGATGTAAGAACCGTTCGATGGAACGGGGAGCCACTTCATGAAGCGACTTCGGCGATTGTGAAAGAAACTATGAATGGCGATTTTACCTTGACTGTGAAATATCCTATTTCTGATTCTGGTATTTACCAGCTCATCCAAGAAGATATGCTGATAAAGGCTCCGACTCCTGTCTTAGGAGCGCAGCTATTTCGTATCAAGAAACCTGTTGAGCACAATGACCATCTGGAAATCACAGCCTATCACATTTCAGATGATGTGATGCAACGATCTATCACACAAATGAGTGTGACTAGTCAGAGTTGTGGCATGGCTCTTTCTCGCATGGTACAAAACACCAAAACGGCTCTTGGAGACTTCTCATTCAACAGTGATATCCAGGACCGTAGGACATTCAACACGACTGAGACAGAAACCCTGTACTCTGTATTGCTGGACGGCAAGCATAGTATCGCCGGAACGTGGGAAGGCGAGCTGGTGCGTGATAACTTTGCGATGACTGTAAAGAAGAGTCGTGGTGAGAATCGTGGTGTTGTTATTACAACACATAAGAATCTGAAGGACTACCAACGAACCAAAAACAGTCAAAATGTTGTTACAAGGATTCATGCTCGATCCACATTTAAGCCTGAAGGTGTTGAAAAGGAAACAACTATCAGAGTGACTGTTGATAGTCCTCTTATTAATTCTTATCCTTACATAAACGAAAAAGAGTATGAGAACAACAACGCAAAATCCGTTGAAGAGTTGCAGAAGTGGGCACAGGCTAAGTTCTCAAATGAGGGCATTGACAAGATCTCTGACGCTATCAAGATTGAAGCTTATGAACTTGATGGGCAAGTTGTTCACATGGGTGATACGGTCAATCTCAAGAGTTGGAAACATAATGTTGATGCATTTAAGAAAGCTATTGCTTATGAGTTCGATGCCTTAAAAGAAGAATATATCTCTCTGACTTTCGATGATAAGGCAGGAGCTGGTGGTTCTAGAACATCTGGTGGCTTATCTAGCGCAGCGGATGCCATCCTTGGAGTAACAGAATCTGCACAAGAAATCGCCCTTGAAAAGGCTCTTCAAAATGCTGACTTAGACTTTGATCATAAGGCTGGATTGCTTAGACAGGAAATTTCTGACGGTATTGAACTTGCAAGAGCAAGAGCTGAAGAAGTCAAGCAAAAACTGTCTGACACTATCAATCAGCGCTTTAATAGCTTTGACAACGGGCCATTGAAAGAAGTTAAGCGCAAGGCTGAGGAAGCTTTGCGAAATGCTGGCGCAAGTACCCTGCTTGCACAGGAAGCTAAGCGGATTGGGCTGGATTCTGTCGCTAGACTTGAAGCGTTTAAGTCGCAGACTACGAGCGCACAAACGGCTCTGTCAGGTGACTTGGACGCTCTGAAACGGACTATCGTGAATGATATTCGACCGAAGCAAGCACAGGCTGAAACTGAGATTGCCAAGCAAGTTGAAGCACTTAGCCGGACTAAGAATGAACTGGCTGGCGCAAGTACCCTGTTTGCACAGGAAGCTAAGCGGATTGAGCTGGATTCTGTCGCTAGACTTGAAGCGTTTAAGTTGCAGACTACGAGCGCACAAACGGCTCTGTCAGGTGACTTGGATGTTCTAAAACGAACTATCGCAAACGATATTCGACCGAAGCAAGCACAGGCTGAAGCTGAGATTGCCAAGCAAGTTGAAGCACTTAGCCGGACTAAAAATGAACTGGCTGGCGTGAAGTCAGCGCAAGCGACGTATGAGGAGACGACGACTCGTAGACTGTCAGAACTGACCAACTTGGCTAATGGTAAAGCCAGCAAGTCAGAACTCACGCAGACGGCTGAGGAGCTAGCTAGTCGGATTGCGAGTGTGCAAGTCGGAGGAATTAACCTCTTGCGTAATACTGCGAGTTTGTTGATTGGCGATCGTTCAAAAGGATGTTGGATGAGTTCAAGCGGAGGAAATGGGCGAGCGATTAGCGTAGAAGTTTTGGCTCCTCCCAAAAAAATGATAAAAAACATGATTCGTGTTATTGAAAATACGAATGGTGGAAATAAAGATTTAACTCAACTTGTTAGATTGCGAATTGGTGAAAAGTACACGATTTCTTGTTATGCAAGGGTTGCTAGCGATAGCCCAAATGCAAACGTGAACTTGCTATTTCGTTCGTGGGCAAATAATACCGATTTAAATCGCAAATTTCAGAAATCCATCTCTCATAAAAATTGGCAAAAATATTCATTTACATTTACTGCTGATGCAATTGAAAATTCAATTCAATTTGGACAATCTGGCGCAGGAATTATCGAAATATGCGCTCCGAAAATCGAATCAGGAACGTTAGCGACTGATTACAGCGAAGCTCCTGAAGATATAGAAGGTCAGATTTCAACAGTTGAATCGACCTTCAAACAGCGTGCTGATTCACTCGAAGCTGGTGTAAGCCGTCTGACTGAAGGCCTTAGAACCAAAGCCGATATCAGCTCACTCAACGTGACTGCTGAGAATATCCGGCAATCTGTGAAGAGTCTTGAGACAGACACGCAGAACAAGCTAAATCAGAAGTTGAGTCAGGCTGAATTTGAGGTGCGAGCCGGCTCTATCCGTCAGGAAATCCTGAACGCAACCAAGGATAAAGCCAGCAAGTCAGAACTCACGCAAACAGCTGAGGAGCTGGCTAGTAAGATAGCGAGTGTGCAGGCATCCGGTCGAAATCTATTCTTGAATTCACTATTCAAGCAGGATATTTCAAAAACAGGAATTTGGACAACGAGTACATATACGGCTACTATCGATAGCGAAAGTAAGTATCTTGGACACAAGGCTCTTAAAATTATAGGTCTGAATCCATCTGGCCGTGATGGAGGTAATCCCAAGGTTACTTATCCAGCTCTGGGTCAATTCGGGAAAGTAATTCCCGGAAGTACGACTAATCAAGATGTAACCATTAGTTTTTATGCTAAGGCAAATAAAAATGGAATAATGCTAAGATCTCGATTAGGGAATATCGGATATAAAACTGGAAATGTGACATTGTCGACAGAAATTAAACGATATGTTGTCCATATTCCAAAAGGTTGGACAAACGAATCCAAGCGGACCACAAATGAATGGTTGTTCAATTTCAACCAGGAAGGAACCGTTTGGATTTGGATGCCGAAGTTTGAAATAAGCGATGTAGATACTTCTTATTCAGAAGCTCCTGAAGATATAGAAGGTCAGATTTCAACAGTTGAATCCAACTTTAAACAGCGTGCTGATTCACTCGAAGCTGGTGTAAGAAGCTTGACTGAAGGCCTTAGAACCAAAGCGGATATCAGCGCACTCAACGTGACTGCTGAAAATATTCGGCAATCTGTGAAGAGTCTTGAGACAGACACGCAGAACAAGCTAAATCAGAAGTTGAGTCAGGCTGAATTTGAGGTGCGAGCTGGCTCTATTCGTCAGGAAATCCTGAACGCAACCAAGGATAAAGCAGATAAGACTCTTGTCGTGGCTGAAGCTGGGAAATTGCGTGAAGAATTTTCAAAAATGAAGGTGGGAGGCCGGAATCTATGGATAAAATCCAAGATGGTTGGAGCTGTAATTGAAAAATTACCTGAAAACCACGTCACAGGTCAAAAAGAATGCTATAGGCTAGAGAACAACTCCACTTTAACATTCAACATTGAACCAGATTTCAGCTCAAGGTTGTATCAAAAAGTTACTTTTAGCGCTTGGATCAAGTACGAAAATGTAGTCCAAGGTCGAAATTTTTGGAATGTATTTAATTGCTTCAAACATTATCTTTTTAGAAAAAATAGTGAGACCGGAGTACAGAGTGGTCCAGATTATGCTACGCTTGGTATGTATAAAGGTTCGGCAGATTGGAAATATATTACATTCACTTATGACTACTCTGAAAAAACAAATTTTGATCAATTGAAGACATCGTTGCGATTCAATCTTGAAGGTGCTACAAGCGGTACAGCTTGGGTAACAGGAATCAAGGTTGAAATCGGTAGTGTGGCGACGGACTGGAGTCCTGCGCCTGAGGACGCTGATGGTCTCATCACTGAAGCTAAGGCTACCTTTGAGCGGACAGCTCAGGGCTTGCGAACCGACTTATCAGCTATTCAGGAATATGTAAATAAAGACGGTCAGCGACAGGAAGCCCTACAGCGCTATACTCGTGAGGAGAGCGCGAGACAAGCGACAGCAGTCCGTGAGCTGGTCAATCGTGATTTCGTTGGTAAGGCTACTTATCAAGAAGATGTTAAGGGTATCAATCAGAGGATTGAAGCTGTTAAAACGAGTGCGAATAAAGACATCGCTAGTCAAATCGCTAGCTATCGTCAATCTGTAGATGGTAAGTTCACGGATATTTCAAGTCAGATAACTACTTATAAGCAAGATGTGGGCGGTCAAATCAGTGGTCTATCAAATAGACTTACAAGCAGTGAGCAAGGAACCACTACTCAGATTTCAAATCTTTCAAATCGGATAAACAGTAACAAACAAGGCGCAGATAATCAGATTTCAAATTTAAAGACTCAGGTCGCTACAAACAAGGATAATGCTGAACGACAAATGGGTAGAATATCTGATCAGGTTTCTGCAAACAAAGCGAATGCTGATAGTCAATTTGCGAATGTGACCAATCAACTAGCGCGAAAAGTAGAGACTACTGATTTCCAGCGTGTTAAGGAAACCAGTAAACTTTACGAGCGGATTTTGGGCAATACTGAAAATGGAATTGCGGATAAGGTTGCTCGCATGGCTCTGACCAATCAACTGTTTCAGGTTGAGGTTGGGAAATATAGTGTAAGCGGCCCTAACCTCATTAAGAATAGTGATTTTAAAAATGCTACGAATGAATGGGGCTCAACTCAAAATTTAGGAAGATTGGTTAAGCATAGCTTTTATCACAACGGGCAGAAAGACCTTATGCGTTTAAGTAATGCAACTAAAAACGAAAACTTTTTGTATAGTCACCGTTTTAATCTTGAACGAAATACTGACTATGTACTGAATTTTAGAGGATTTAACAACAGTGCTCTCGCAAGCTATGATGTTTATATTTTGGGACGAAGAGCAGGCGAGAGCGATGGATTCACAATCGTTAAGAAAGTTGTCAGCAGCAAGAAACTATCTACCTCTAGATGCGAAGATGTCTCAGTAACTTTTAATTCCGGAGAAATGGATAATGCTTACATTCGTTTTGATAACAATGGCTCATCATCAGGAACAGCTGATTTGTATATTACAGAAGTTGACTTGTACAAAGGTTATAAACCTAGAACATGGCAACCACATCCAGAAGATGCAGTCGCAGATGCGAATAAGAAGCTTGAAGCCACGCAAACAAAAATGACTCTACTAACTGGCTCATGGGCAGTTCAAAACATCAACTCGGCTGGAGATATCATCTCTGGAATCAATCTTGGCGCCAATGGACATAACCGCTTCGTTGGGAAATTAACCCATATAACAGGCGAGACCCTGATTGACAGAGCAGTCATCAAGTCTGCCATGGTTGATAAGCTCAAAACGGGCAATTTTGAAGCTGGTTCGGTCACGACTACGATATTAGACGCTGAAGCGGTCACGGCCGAGAAAGTGAGATTTGATGATGCGTTTATTAGAAAAATGACTGCAAATGACGCTTTTATTGACCAACTGACATCTAAACGTATCTTCTCTACTAAGGTTGAGTCCGTCATTTCTAGTTCAACCTTCCTAGAAGCCTATCAAGGTCGAATTGGTGGATTCACACTTGGTCAATTTGACCAGGGTGGCGGTCGCTGGATTTCAGGTGTCAATCAGTTCTCTGTTGGTATGGGGAATGGTGCCGGGTATGGAGTCCGGACAGCCTTCTGGGCGAACTGGGGAAATAATTGGAACTATGCCGGACCTAAAGCATGGAACGTCAATACTGATGGGAAAATGTACTGTAGGAATGAAGTCGGTTTTTATGATCAAGTGGATTTTTCGAATTCATCTAGAGCAAACTTCTATGGGAATACTACTTTTTCTCGTTCTCCTGTGTTTTCAAATGGTATCGAACTTGGAAGTAAAGATGTGCTTGGTGATGGTTGGAATCCCAAAGGCGGAAGGAATGCGGTTGTTTGGTGGAATCAGGTCGGTAGCGGTAGCGTGAAGTATTGGATGGAACAAAAATCAGACAGACGCTTAAAAGAGAACATCACAGATACAGCTGTGAAAGCCTTGGACAAAATCAACAGATTAAGAATGGTTGCATTTGATTTCATCGAAAATAAGAAACATGAGGAGATTGGTCTAATAGCTCAAGAGGCTGAAACCATCGTTCCAAGAATTGTCTCACGAGATCCTGAGAATCCAGATGGCTATCTACATATCGACTATACCGCTTTAGTTCCTTACTTAATCAAGGCTATTCAAGAATTAAATCAAAAAATAGAAAAAATGGAGAAAACAATAGCATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
4f8df1e57b01fd180423fc878f7e0706bef49dbbd9c0b5f218ca5f225713b141
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,6166
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Pneumococcal prophages are diverse, but not without structure or history Brueggemann,A.B., Harrold,C.L., Rezaei Javan,R., van Tonder,A.J., McDonnell,A.J. and Edwards,B.A. 2017 28218261 GenBank