Protein

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Genbank accession
QPZ53549.1 [GenBank]
Protein name
putative tail tubular B
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MARVAVQLTNFTGGELSPRLDGRNDLAKYPTGLKTLENFVVFPHGSAARRSGTQFVAEVKDSSAKTRLIPFEFSTTQTYMMEFGNQYIRFYKDNGQILESDVTISGATQANPVVVTATGHSYDNGDEISITGVVGMTELNNKRYLVANKTTNTFEITDVDGTNINGTGFTAYTSGGVANRVYEIATPYLTAELFDLKFAQSADVMYITHPNHEVEKLSRSGHTSWTLTDVDFTDGPYLDDNITATTITTSAHTVGTGRTLTASAITGINGDTGFQTTDVGRLVRFRDGYGKITARTDTLNVTIEILEDMGSTSASTDWSLGAFSDTTGHPSCVTFFEQRLVFAATLNNPQTIYFSKSGDYENMNENRGGTVADDDAIIYTIASNQVNAIRFMTATRTLIIGTAGGEFAVSGGGTDVAITPTNILIKKQSNHGAANVDAIPAGNATLFLQRAKRKLRELAYNFDVDGYVSPDLTILAEHITEGGLTQISYQQEPNQIIWGTRDDGQLVGLTYQREQQVVAWHRHKFGGTFGSGASATGFGVCESVATIPTDDSEYQTYVIIKRTINSVTRRYVEYINNYDFDETDDTTFNFLDSQLEYSGSAATTISGLDHLEGQTVSVLADGSTHPDKTVTSGSITLDRSATKVKVGLSYTSLLQTMRLDAGSQDGTSQGKTKRIFDITIRLYESIGVEVGPDLSNMERIPFRSSADAMDSGLGVFTGDKEVEFRGNYETDGFIFVRQTQPLPLTILSLYPRLQTNDG
Physico‐chemical
properties
protein length:758 AA
molecular weight: 82520,41450 Da
isoelectric point:4,84350
aromaticity:0,09103
hydropathy:-0,29551

Domains

Domains [InterPro]
DC_0058
STR
1–756
DC_0058
IPR042302
STR
100–179
IPR042302
IPR032418
RBD
116–181
IPR032418
QPZ53549.1
1 758
Architecture
STR
STR 1-756 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QPZ53549.1
1 758
Domain Start End Length (AA) Confidence
N-terminal 1 98 98 0,9933
Central domain 99 297 200 0,1707
C-terminal 298 758 460 0,1269
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-98
Central
99-297
C-terminal
298-758

Taxonomy

  Name Taxonomy ID Lineage
Phage Pelagibacter phage HTVC035P
[NCBI] 		2796521 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Candidadtus Pelagibacter sp. HTCC1062
[NCBI] 		198252 Pseudomonadota > Alphaproteobacteria > Candidatus Pelagibacterales > Candidatus Pelagibacteraceae > Candidatus Pelagibacter >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QPZ53549.1 [NCBI]
Genbank nucleotide accession
MW273923 [NCBI]
CDS location
range 25803 -> 28079
strand -
CDS
ATGGCTAGAGTTGCTGTTCAATTGACAAACTTCACAGGTGGTGAGTTATCACCAAGACTTGATGGTCGTAATGATTTAGCTAAATACCCTACAGGATTAAAAACATTAGAAAACTTTGTAGTGTTTCCACATGGTAGTGCTGCAAGAAGATCTGGCACACAGTTTGTTGCAGAAGTAAAAGATAGTTCAGCTAAAACAAGATTAATCCCTTTTGAATTTTCTACAACACAAACTTACATGATGGAGTTTGGAAATCAGTACATAAGATTCTACAAAGATAATGGTCAAATATTAGAATCAGATGTTACAATTAGTGGAGCAACACAAGCTAATCCAGTAGTAGTAACTGCAACAGGTCATAGCTATGACAATGGTGATGAGATCAGTATTACTGGTGTTGTAGGTATGACAGAGTTAAACAATAAAAGATATTTAGTTGCAAACAAAACAACTAATACATTTGAGATTACAGATGTTGATGGAACTAATATAAATGGTACAGGTTTTACAGCTTACACTTCTGGTGGTGTAGCAAATAGAGTTTATGAAATAGCAACTCCATATTTAACTGCAGAATTATTTGATCTAAAGTTTGCACAAAGTGCTGACGTTATGTATATCACACATCCAAATCATGAAGTTGAAAAGCTGTCAAGATCTGGTCATACATCTTGGACTCTAACAGATGTAGACTTTACTGATGGTCCATATCTAGATGATAATATTACAGCTACAACGATTACAACTTCAGCACATACTGTAGGAACTGGTAGAACTTTAACTGCTTCAGCAATCACAGGTATCAATGGAGACACAGGATTTCAAACAACAGATGTTGGAAGGTTAGTTAGATTTAGAGATGGTTATGGAAAAATAACTGCAAGAACAGATACATTAAATGTAACTATAGAAATATTAGAAGATATGGGATCAACCAGTGCGTCTACTGATTGGTCGTTAGGTGCATTTTCAGATACTACAGGTCATCCTTCTTGCGTAACCTTCTTTGAACAACGATTAGTTTTTGCAGCGACACTTAATAATCCACAAACAATTTATTTTTCAAAATCTGGTGACTATGAAAACATGAATGAAAACAGAGGTGGTACTGTAGCAGACGATGATGCAATTATTTATACAATCGCATCAAACCAGGTAAACGCAATTCGTTTCATGACCGCTACAAGAACTTTAATTATTGGTACTGCAGGTGGTGAGTTTGCAGTTAGTGGCGGTGGTACAGATGTTGCAATTACACCTACAAACATTCTAATTAAAAAACAATCTAACCATGGCGCAGCAAACGTAGATGCTATTCCTGCAGGAAACGCTACACTGTTTTTGCAAAGAGCTAAAAGAAAACTAAGAGAACTTGCTTACAACTTTGATGTAGATGGTTATGTATCTCCAGATCTTACTATACTTGCCGAACACATTACTGAAGGTGGGTTGACACAAATATCTTATCAACAAGAACCTAATCAAATTATTTGGGGTACAAGAGATGATGGACAACTTGTAGGATTAACTTATCAAAGAGAACAACAAGTAGTTGCTTGGCACAGACATAAGTTTGGCGGAACATTTGGATCTGGAGCAAGTGCTACTGGTTTTGGTGTTTGTGAAAGTGTTGCAACAATACCTACGGATGATTCTGAATATCAAACTTATGTAATTATAAAAAGAACAATCAATAGTGTGACTAGAAGATATGTAGAATATATTAACAATTATGATTTTGATGAAACAGATGACACAACATTTAATTTTTTAGATTCACAATTAGAATATAGTGGTAGCGCAGCAACAACTATATCTGGATTAGATCATCTTGAAGGTCAAACAGTTTCTGTATTAGCCGATGGTTCTACGCATCCAGACAAAACTGTTACTTCTGGTAGTATAACTTTAGATCGATCTGCAACTAAAGTTAAAGTTGGATTAAGCTATACATCGTTATTACAAACAATGAGATTAGATGCTGGTTCTCAAGACGGCACATCTCAAGGTAAAACTAAAAGAATATTTGATATTACAATAAGACTTTATGAATCTATTGGTGTGGAGGTTGGACCAGACTTATCTAATATGGAACGTATTCCATTTAGATCTTCAGCTGACGCTATGGATAGTGGATTAGGAGTCTTTACAGGAGACAAAGAAGTGGAGTTTAGAGGTAATTATGAAACTGATGGGTTTATCTTTGTAAGACAAACTCAACCTTTACCTTTAACGATTTTATCGTTATACCCTAGACTTCAGACAAATGATGGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
0a3f5c8fee689c7cc4ca1fd20e239107143519bbe860bcc947a6b33982e98bdd
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9406
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic diversity, life strategies and ecology of marine HTVC010P-type pelagiphages Du,S., Qin,F., Zhang,Z. and Zhao,Y. — — GenBank