Protein

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Genbank accession
QIG76874.1 [GenBank]
Protein name
pectin lyase fold domain-containing protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MVANITSKVASGTTVTISGTATPGKIVRGKIGTTDYSTTADVSGNWTATVNNLPVGVVNVSAREFGSASVLVRKQMEISLARLKNTGNTTQNTLLPTFYTNLALLEGGVVQDRLIIFEYRKSGDTEWLIDGTELTDSSGNATHLFTNTLSDGNWQVRTRAGTLSGGFIEVIGNTISFLVDKPNEAPVMPPSYDKWIDGKAEGKYGYMGYMIIAQGSASGTEFGKILPLNTPKPAATFSIPASSDFAINSSTGMITLINSSLAAGTYYVTVTASNSAGSANITVPLIVTGIVSKVYYVDFDNGLDTNDGRTPAVPLKTLSAANNKRGSDIFSTYTLRFKRGVVWDITSATAPRNLTNYECYGDPSKDPPHFRNMNTGGGIFVYSGASGQINTINMRDLMLTASLTAIDVQNWLTGNIVRIKFGVNAEFGHAMYLHDARGISILHCYVPPGINGDGFYLRKFGRGATPNRVSFCYFGIPYGTGADNLQITSERKSGMQPSNVEVSDNIFRHSVASNATKGNCVIEDGDRVVFERNDCIGNYFCLSQLSRNVTVRDNILRGAILNDNSFGIGSGALDHTIDCRILFNKIEGNWTAIALSGFDDPDTPPGWQRADYEILYNMTRKNKVFAKQDRPASGFIQDNVSEQNNSNSISGNGGAAQAFTVWSTTYTPDYASFTRGSNPVNTTATTDPSTAPSISGTVSVGQTLTVTVPPIGGATSAVQWLLNDQKVVGETGLTYIVPSGAPNNANMPTNLNTPTISCAVIYTMSDGSTLIVPARYDDGKATRMIS
Physico‐chemical
properties
protein length:786 AA
molecular weight: 84110,28330 Da
isoelectric point:6,22429
aromaticity:0,08651
hydropathy:-0,16501

Domains

Domains [InterPro]
IPR013783
STR
2–69
IPR013783 DC_0928 IPR013783 IPR011050 DC_2066
IPR013783
STR
235–295
IPR013783 IPR011050
QIG76874.1
1 786
Architecture
STR
ATT
STR
STR
RBD
STR 2-69 | ATT 70-235 | STR 236-295 | STR 364-667 | RBD 690-785 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QIG76874.1
1 786
Domain Start End Length (AA) Confidence
N-terminal 1 175 175 0,8848
Central domain 176 704 530 0,9209
C-terminal 705 786 81 0,4201
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-175
Central
176-704
C-terminal
705-786

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RHph_Y1_11
[NCBI] 		2509770 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QIG76874.1 [NCBI]
Genbank nucleotide accession
MN988558 [NCBI]
CDS location
range 36940 -> 39300
strand +
CDS
ATGGTAGCCAACATCACATCAAAAGTTGCAAGTGGCACCACTGTCACGATCAGCGGCACCGCCACCCCCGGCAAGATCGTCAGGGGGAAAATCGGCACCACCGACTATTCGACCACCGCCGATGTCAGCGGCAACTGGACGGCCACGGTCAACAACCTCCCCGTGGGGGTCGTCAACGTTTCGGCTCGTGAATTCGGCTCGGCGAGCGTCCTCGTCCGAAAACAAATGGAGATTTCCTTGGCTCGCCTGAAAAACACCGGCAACACCACGCAGAACACCCTGCTGCCGACCTTCTACACCAACCTGGCGCTGCTCGAAGGCGGCGTGGTGCAGGACCGCTTGATCATCTTCGAATACCGCAAGTCAGGCGATACGGAGTGGTTGATCGACGGCACGGAACTGACTGACAGCAGCGGCAACGCCACCCACCTCTTTACCAACACGCTCTCGGACGGGAACTGGCAAGTGCGGACGCGGGCAGGCACGCTTTCCGGAGGCTTCATCGAAGTGATCGGTAACACCATCAGCTTCCTGGTTGACAAGCCGAACGAAGCACCGGTTATGCCGCCGTCCTATGATAAATGGATCGACGGCAAGGCCGAGGGCAAATACGGCTACATGGGCTACATGATCATCGCCCAGGGCTCGGCATCCGGCACCGAGTTCGGCAAGATCCTGCCGCTCAACACCCCGAAGCCGGCCGCGACCTTCTCGATCCCGGCCAGCTCCGATTTCGCCATCAACTCCAGCACCGGCATGATCACGCTGATCAACAGCTCGCTGGCCGCCGGCACCTACTATGTGACCGTCACGGCTTCCAATAGTGCCGGCTCTGCGAACATTACCGTCCCTCTGATCGTCACCGGCATCGTCAGCAAGGTCTACTATGTCGACTTCGACAACGGCCTCGACACCAATGACGGACGCACGCCGGCCGTGCCGCTCAAGACGTTGTCGGCGGCCAACAACAAGCGCGGCTCGGACATCTTCTCGACCTACACCCTGCGCTTCAAGCGTGGTGTCGTCTGGGATATTACATCGGCGACGGCCCCTCGCAACCTCACCAACTATGAATGCTACGGTGACCCGTCAAAGGACCCGCCGCATTTCCGCAACATGAACACGGGCGGGGGCATCTTCGTCTACAGCGGCGCGAGCGGGCAGATCAACACGATCAACATGCGCGACCTGATGCTGACCGCTTCGCTGACTGCGATCGACGTGCAGAACTGGCTGACGGGCAACATCGTCCGCATCAAGTTCGGGGTGAACGCCGAATTCGGCCATGCGATGTATCTGCATGATGCACGCGGCATTTCGATCCTGCACTGCTACGTGCCTCCGGGGATCAACGGCGACGGTTTCTATCTGCGCAAATTCGGCCGAGGCGCAACCCCGAACCGCGTGTCGTTCTGCTACTTCGGCATTCCCTACGGCACCGGAGCCGACAACCTGCAGATCACGTCGGAACGCAAGAGCGGCATGCAGCCGTCCAACGTCGAGGTATCCGACAACATCTTCCGCCACTCGGTCGCCTCGAACGCCACCAAGGGCAACTGCGTTATCGAAGACGGCGACCGTGTCGTGTTCGAGCGCAACGACTGCATCGGCAACTACTTCTGCCTGTCGCAGCTCTCGCGCAACGTCACCGTCCGTGACAACATCCTGCGCGGCGCGATCCTCAACGACAACTCGTTCGGTATCGGCTCGGGCGCACTCGACCACACCATCGACTGCCGCATCCTGTTCAACAAGATCGAAGGCAACTGGACAGCCATCGCCCTCTCGGGCTTCGATGACCCTGACACCCCTCCCGGCTGGCAGCGCGCCGACTACGAAATCCTCTACAACATGACGCGCAAGAACAAGGTCTTCGCCAAGCAGGACCGCCCCGCCAGCGGCTTCATCCAGGACAACGTCTCGGAGCAGAACAACAGCAACTCGATCTCGGGCAACGGCGGCGCGGCCCAGGCCTTCACCGTGTGGAGCACGACATACACGCCTGATTACGCCTCCTTCACCCGAGGCTCGAACCCGGTTAACACGACGGCGACCACCGACCCGTCTACGGCCCCCAGCATCTCGGGAACCGTCTCTGTCGGCCAGACGCTGACCGTGACTGTCCCACCGATCGGGGGCGCGACCTCGGCCGTGCAGTGGCTGCTCAATGACCAGAAGGTCGTCGGGGAAACTGGCCTGACCTACATCGTCCCCTCGGGAGCCCCGAACAACGCCAACATGCCGACCAACCTCAACACACCGACCATCTCCTGCGCGGTCATCTACACCATGTCGGATGGCAGCACCCTGATCGTGCCGGCCCGTTATGACGACGGCAAGGCGACCCGCATGATCTCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f2724b1097456c7aee690d709ee919c8ef602c49b23ca48f92e7026829b0a22c
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2927
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Patterns of diversity and host range of bacteriophage communities associated with bean-nodulatin bacteria Vann Cauwenberghe,J., Santamaria,R.I., Bustos,P., Juarez,S. and Gonzalez,V. 1998-01 — GenBank