Protein

View in Explore
Genbank accession
QGZ18092.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,73
TF
Evidence RBPdetect2
Probability 0,90
Protein sequence
MAYIGKTPVIGNFVKLDAITAVNGQAAYTMQNGGSNFTDYESVNQFLVSLNGTIQAPTDSFTVSGSTITFASNLSTGDVIDFIMVFGNSLSAGTPTDATVTSAKLSGALVTPSTLDVNGNELILDADADTSITADTDDTIHVKTGGSDRVTVNDTGLAVGTTPEAPLTVGSNNSGQQGVVGKQALFSGTHTSTYNDGNSGSWGGITIVNQDNTSNRTATGITFVNRSTNSGVAGIQSTNDGTEQRADLRFITRGTGDVVAERMRIDDDGNVGIGTSSPSYKFHVVQTAAATAARVHSDTNNSGVLGMSVLAGLDSPSSSGDCKWFRLADGNDSGKAYIQFKSSSPNAEFAAISDERLKTNIQNTDVVGLDVINNLRLVKFDWNETATQDAGWSMTGHQKLGFVAQEVEQILPEFISEDANGFKIMGDSGFIPYLIKAVQEQQTKIKELEARITTLENA
Physico‐chemical
properties
protein length:458 AA
molecular weight: 48126,32780 Da
isoelectric point:4,48598
aromaticity:0,06550
hydropathy:-0,22074

Domains

Domains [InterPro]
DC_1367
RBD
170–458
DC_1367
IPR036388
RBD
347–424
IPR036388 Coil
IPR030392
CHP
353–414
IPR030392
IPR030392
CHP
353–452
IPR030392
QGZ18092.1
1 458
Architecture
RBD
RBD 170-458
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QGZ18092.1
1 458
Domain Start End Length (AA) Confidence
N-terminal 1 96 96 0,9863
Central domain 97 295 200 0,0988
C-terminal 296 458 162 0,9887
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-96
Central
97-295
C-terminal
296-458

Taxonomy

  Name Taxonomy ID Lineage
Phage Pelagibacter phage HTVC106P
[NCBI] 		2686460 No lineage information
Host Candidatus Pelagibacter sp. HTCC7211
[NCBI] 		439493 Pseudomonadota > Alphaproteobacteria > Candidatus Pelagibacterales > Candidatus Pelagibacteraceae > Candidatus Pelagibacter >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QGZ18092.1 [NCBI]
Genbank nucleotide accession
MN698244.1 [NCBI]
CDS location
range 20412 -> 21788
strand -
CDS
ATGGCATATATAGGTAAAACACCAGTAATAGGAAACTTTGTAAAGCTAGACGCAATAACTGCTGTTAATGGTCAAGCTGCATACACTATGCAAAATGGTGGCTCAAACTTTACAGACTATGAAAGTGTAAATCAATTTTTAGTGAGCTTAAATGGAACTATCCAAGCTCCAACAGACAGTTTTACAGTAAGTGGTTCGACAATTACGTTTGCATCTAACCTATCTACAGGAGATGTTATAGATTTTATAATGGTGTTTGGTAATTCTTTATCGGCAGGAACACCGACAGATGCTACTGTTACAAGTGCAAAATTATCAGGTGCTTTAGTTACACCTTCAACTTTAGACGTTAATGGTAACGAATTAATTTTAGATGCTGACGCAGATACAAGTATTACAGCAGACACAGACGATACTATTCATGTAAAAACTGGTGGTAGCGATAGAGTAACAGTAAATGATACTGGATTAGCTGTCGGCACAACTCCAGAAGCACCATTAACTGTTGGTAGTAATAATTCTGGTCAACAAGGTGTTGTTGGAAAACAAGCATTATTTTCTGGTACTCATACTTCAACTTACAATGATGGAAATTCTGGAAGTTGGGGTGGTATTACCATAGTTAATCAAGACAATACTTCAAACCGAACTGCTACTGGTATTACTTTTGTTAATCGTTCAACCAATTCTGGTGTGGCTGGTATTCAAAGTACAAATGATGGAACTGAGCAAAGAGCTGATTTAAGATTTATTACTAGAGGTACTGGAGATGTTGTAGCAGAAAGAATGAGAATAGATGATGATGGTAACGTAGGTATTGGTACAAGTTCTCCAAGTTATAAATTTCATGTTGTACAAACTGCTGCTGCTACAGCAGCTAGAGTGCATAGTGATACTAATAATTCTGGAGTTTTAGGAATGAGTGTTTTAGCTGGTTTAGATAGTCCATCAAGCAGTGGAGATTGTAAGTGGTTTAGATTAGCAGATGGAAATGATAGTGGTAAAGCATATATCCAATTTAAAAGTTCTAGTCCAAATGCAGAATTTGCAGCTATTTCAGATGAAAGATTAAAAACAAATATACAAAACACTGATGTTGTTGGTTTAGATGTAATTAATAATTTAAGACTTGTTAAGTTTGACTGGAATGAAACTGCTACACAAGATGCTGGTTGGAGTATGACTGGTCATCAAAAATTAGGTTTTGTTGCACAAGAAGTAGAACAAATATTACCAGAATTTATTAGTGAAGATGCTAATGGTTTTAAAATAATGGGAGATAGTGGATTTATTCCTTATTTGATAAAAGCAGTACAGGAACAACAAACTAAAATTAAAGAATTAGAAGCTAGAATTACAACATTGGAGAACGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
56ac77e6854563ba96c35887934adca4822d9944f9e63cb012c09ebc6d6ec48b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6832
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Novel pelagiphages prevail in the ocean Zhang,Z., Qin,F., Chen,F., Chu,X., Luo,H., Zhang,R., Du,S., Tian,Z. and Zhao,Y. 2019 — GenBank