Protein

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Genbank accession
QEI25038.1 [GenBank]
Protein name
receptor-binding protein
RBP type
TSP
Evidence DepoScope
Probability 0,93
TSP
Evidence RBPdetect
Probability 0,88
Protein sequence
MSFFAGKFSDGKTVLSLNAANGGDINQHYSPNTNSIFHSDMPFVLVDGTYEAALGDAGNGYFVTQMPWDIINIKSNDPGRVILTAIEINGTHRGFLNGTQSQVGQFLSFFEDPPRAGAELSVTSAFAIGDSLAHGTYIYNGGLGHEESIARQGSGGSLLQSSGFQIFRPGGVPAGEAIARAWSLMGFPTGVSTVPLDGGNADYWDPNWQAPIGSAGRGHDWFYVCSSNIRGFAGKKGVLPDNVNINYQSPSFPTKVYVCRGSTTNMAAQATRKVYVQDWYNVTPTKVIWYVLNLRYSNGSMGVSGNPFTGSDILISPSNFTIKGVSLPNTGYKFINQNAFGNLGYRPDMEYVGNNAAYTGVFGDNTARCEFIGSSNGGLWSPVNYGGAASQISLYKFGVGKQWYVDTNTNSIGNEHGPVWSPSTVPLRLFPGNVASTYVGDDITPSYPGAGDFYTPLATVWLGLPNAHSTVILTTEVIMGNLNTAGMPVRTYGGSAWQVQGRRQQSYTAGDGVFHQILTLPPGYLVPYHSTTSYSYTQTWASRPDEFAFRRNGYIYTIKNLGNGNVELGVIIHAAEAAAVFLPRLRVTVQRLT
Physico‐chemical
properties
protein length:593 AA
molecular weight: 63897,52960 Da
isoelectric point:6,59607
aromaticity:0,12479
hydropathy:-0,17504

Domains

Domains [InterPro]
IPR059609
RBD
1–593
IPR059609
QEI25038.1
1 593
Architecture
RBD
RBD 1-593
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QEI25038.1
1 593
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,5866
Central domain 11 375 366 0,7705
C-terminal 376 593 217 0,8538
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-375
C-terminal
376-593

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SE24
[NCBI] 		1647454 Uroviricota > Caudoviricetes > Demerecviridae > Epseptimavirus > Epseptimavirus SE24
Host Salmonella sp.
[NCBI] 		599 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QEI25038.1 [NCBI]
Genbank nucleotide accession
MK972707 [NCBI]
CDS location
range 112268 -> 114049
strand -
CDS
ATGAGTTTTTTCGCAGGAAAATTTAGTGATGGTAAAACTGTATTATCTCTAAACGCTGCTAATGGTGGTGATATAAATCAGCACTACTCTCCAAATACTAATAGTATCTTCCACTCAGATATGCCATTTGTCCTAGTTGATGGGACTTACGAGGCTGCTCTAGGTGATGCAGGTAATGGGTATTTTGTTACTCAGATGCCTTGGGATATTATAAACATTAAATCCAATGATCCTGGTAGAGTTATATTAACTGCTATTGAGATAAATGGTACTCATAGGGGTTTCCTTAATGGTACTCAATCTCAGGTTGGCCAGTTCTTATCATTCTTTGAAGACCCACCACGTGCTGGTGCTGAATTATCTGTAACATCTGCTTTTGCGATCGGTGATAGTTTAGCTCATGGTACTTATATCTATAATGGTGGTCTTGGTCATGAGGAATCTATTGCTAGGCAAGGTTCTGGAGGCAGTTTACTACAGTCCTCTGGTTTCCAGATCTTTAGACCTGGTGGTGTTCCTGCTGGTGAAGCCATTGCCAGAGCCTGGAGTCTTATGGGTTTTCCAACGGGTGTCTCTACTGTTCCTTTAGATGGTGGTAACGCAGATTATTGGGATCCTAACTGGCAGGCGCCTATTGGTTCTGCTGGTAGAGGCCATGATTGGTTTTATGTTTGTAGTTCTAATATTCGTGGCTTCGCAGGTAAAAAAGGCGTACTACCAGATAACGTAAACATTAACTACCAATCTCCCTCCTTTCCTACTAAAGTATACGTTTGTAGGGGTTCTACAACTAATATGGCTGCGCAAGCCACTAGAAAGGTATATGTGCAGGATTGGTACAACGTTACGCCAACTAAGGTTATTTGGTATGTACTAAATCTGCGCTATTCTAATGGTAGTATGGGAGTTTCTGGTAACCCATTTACCGGTTCAGATATCCTAATATCTCCATCTAACTTTACTATTAAAGGGGTTAGTTTACCAAATACAGGATATAAATTCATTAACCAGAATGCCTTTGGAAACTTAGGCTATCGCCCTGATATGGAGTATGTTGGTAATAACGCTGCGTATACCGGAGTTTTTGGTGATAATACTGCACGATGTGAATTTATCGGCTCTAGTAATGGCGGGTTGTGGTCTCCTGTTAACTATGGGGGTGCAGCTTCTCAAATTAGCTTATATAAATTTGGTGTAGGTAAACAATGGTATGTAGATACTAATACCAACTCCATCGGTAATGAACATGGACCTGTGTGGAGTCCTAGTACTGTACCCCTCAGGTTATTTCCAGGCAACGTTGCAAGTACTTATGTTGGTGATGATATAACTCCATCCTACCCTGGTGCTGGTGACTTCTACACACCTTTGGCCACAGTTTGGTTGGGATTACCAAATGCTCACTCTACTGTTATATTAACTACTGAAGTTATTATGGGTAATCTTAATACTGCTGGAATGCCTGTGCGTACTTACGGCGGTAGCGCTTGGCAGGTACAAGGTAGACGTCAACAAAGTTATACAGCTGGTGATGGGGTATTCCACCAGATTCTTACTCTGCCACCTGGATATCTAGTACCTTATCACAGTACAACTTCCTATAGTTATACACAAACTTGGGCTAGTAGGCCAGATGAGTTTGCTTTCCGTAGGAACGGATATATTTATACTATTAAAAACCTTGGTAATGGCAACGTTGAATTGGGTGTTATCATTCACGCTGCAGAAGCGGCAGCTGTTTTCTTGCCAAGACTACGTGTAACAGTTCAACGCCTAACCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
25d56eef5a393f28f26457785ccde5abe83ceb8ae4c3366322a4cd540c14f921
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2706
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Salmonella bacteriophage diversity and host specificity revealed by physiological characterization and whole genome sequencing Fong,K., Tremblay,D., Delaquis,P., Moineau,S., Goodridge,L., Levesque,R. and Wang,S. 2019-09-14 — GenBank