Protein

View in Explore
Genbank accession
QPB08404.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence RBPdetect
Probability 0,78
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MADRFPLIVNATSRKIEELVAGDNLDLTGNGVIISGDVGDGKYLKSDGGFVVWDNPGDVYLNASQTLTNKIFESCTLSGSLNTITNISNSSLVNSGITINGTTVNLGNSITTPNDNTTYTLGVADGLTSSQKRIQLTDSGSTVDEIIFAVGTPQSIPQGTNALSLLVDRSGDTFTVSGYVVDNNTVTTIQSFTGGTPQSGNILFKGTGGATITQDSANRTIEINTRNDDTITQLRAGTGQVFSDGNFTFLAGNEVSLVQGVDGNSDPTITISSTDTITRVQGGGSGSLQSGDILIQGGSSGNVTVSQSGNTIDIDSQNDDTITKIGSVSSNGTFTVAPGDFRFTASGDAELTQTTNSGVTEIDISFTNTDTGAGLDAANGIILNGSDFELKNAGSLTDQKILKWDSANAQLVNSLLEDNGTTVTVAGNLNVTGTTTTLESTILQVADPIIELRKGASLVGANGGIQINRTSDANGVVQTWIGLQWYETGGYFRTLDNAGVARRFVTENENQTLTNKTLNNASFTGTTDIGVATATTLNGLTISPVISSTLDFADQKTLTVNNTMTLSSTDGAVINFANGGGAGSQVAYSSYNLGQFSTTTSVQLRGTVSDPTGSGQLVFNTTPVISTAITTQDASFSVFNTNATSINAFGAATALNLGATTGTTLVRNDLDVNGNVVLNTNDTDTFTVEGIPNFDKNDITIRGTATSPMTIGRGNGSVSSNTALGTEVLSANQSGSQNTGVGFEALASNVSGLGNTAVGDGALSFSDVGSNNVAVGKNAAGSSTSGDNNVAVGDNAMYGSSAGDDNVCIGAYAGYNMTGNGNVLIGSGRPIGDPAIPGATYQPPSSGGSVQLVIGSTTEVSGSRVSGTWIKGDNLFNVTMENDLSVGGELVVGGNLTVNGTTTTINTQNIQIDDNALELAAVQLAQFSGNVTNGSPFVTNVEVFTGVVVGMTVNVVSGTSLPAGTTTVTSVDPDNGTIGLSQNITGSGGTGVFEALGPTDEAANGGGLILKGTTTDKTILYDNTRADKYWKFSENLEIKANRHIAINGTELLSGTTLGTTVVNSSLTSVGTLTGLAVNGAASFGGKIKESNDNNFTTSLAPDGSGVLTINTATSNTICGTPTAAAITEWAFTNVNLNNGESLTITLILASNTTALYGDACSIDGNSVTNGVKWSGGSPPTPTNNTDILTFVMVKDGSGNIQVFGQGNTDFS
Physico‐chemical
properties
protein length:1211 AA
molecular weight: 123379,34450 Da
isoelectric point:4,08254
aromaticity:0,05285
hydropathy:-0,08159

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QPB08404.1
1 1211
Domain Start End Length (AA) Confidence
N-terminal 1 741 741 0,6229
Central domain 742 1021 281 0,5124
C-terminal 1022 1211 189 0,8307
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-741
Central
742-1021
C-terminal
1022-1211

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-H9-2
[NCBI] 		2783669 Uroviricota > Caudoviricetes > Pantevenvirales > Yushanluvirus > Yushanluvirus satich
Host Synechococcus sp. WH 8102
[NCBI] 		84588 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QPB08404.1 [NCBI]
Genbank nucleotide accession
MW147367 [NCBI]
CDS location
range 117167 -> 120802
strand -
CDS
ATGGCAGATCGTTTTCCACTTATTGTTAATGCTACTTCAAGGAAGATCGAAGAACTTGTAGCAGGTGACAATTTAGATCTCACTGGCAATGGTGTTATCATCAGCGGAGACGTGGGTGATGGGAAATATCTAAAGAGTGATGGAGGATTTGTTGTCTGGGATAATCCTGGTGATGTTTACCTGAATGCATCACAGACATTAACTAATAAAATCTTTGAAAGTTGTACTTTATCAGGATCGCTTAATACCATAACCAATATCTCAAATAGTTCATTGGTTAACTCTGGTATTACAATCAATGGAACCACAGTAAATCTTGGCAATTCAATAACAACACCAAACGACAATACAACTTACACGTTGGGAGTTGCTGACGGTCTAACTTCCTCCCAAAAGAGGATTCAACTAACTGATAGTGGATCAACAGTAGATGAAATAATTTTTGCAGTAGGAACTCCACAATCTATTCCTCAAGGAACAAACGCTTTAAGTCTACTTGTAGATAGAAGTGGTGACACTTTCACAGTTTCTGGATACGTAGTAGATAATAATACTGTCACTACTATTCAATCATTTACTGGTGGTACTCCACAGTCTGGTAACATCCTTTTCAAAGGAACAGGTGGAGCAACTATTACTCAAGATTCTGCCAACAGAACTATTGAAATTAATACGAGAAACGATGACACTATAACTCAACTACGAGCTGGTACTGGTCAAGTATTTTCTGATGGAAACTTTACTTTCCTTGCTGGAAATGAAGTTTCTCTTGTACAAGGTGTTGATGGCAACAGTGATCCAACAATTACAATCAGTTCTACAGATACGATTACTCGTGTACAGGGCGGAGGTTCTGGATCTCTTCAATCAGGAGACATTTTAATTCAGGGTGGTTCTAGTGGAAATGTAACTGTCAGTCAGTCTGGAAATACCATCGATATTGATTCACAGAACGACGACACTATCACCAAAATTGGATCTGTATCTTCTAACGGTACGTTTACTGTAGCACCAGGAGACTTTAGATTCACAGCTTCAGGTGATGCTGAACTAACACAGACCACAAACTCAGGTGTCACTGAAATTGATATCAGTTTCACTAACACTGATACTGGTGCTGGTCTTGATGCTGCTAATGGTATCATTCTAAATGGATCTGATTTTGAACTTAAGAATGCTGGGTCATTAACCGACCAAAAGATTCTAAAGTGGGACTCTGCTAATGCTCAGTTAGTTAACAGTCTATTAGAAGACAACGGAACTACTGTTACAGTTGCTGGTAACTTAAATGTTACTGGTACTACCACCACATTAGAGAGTACGATCCTCCAAGTTGCTGATCCTATCATTGAATTAAGAAAAGGAGCAAGTCTCGTAGGTGCTAATGGCGGCATTCAAATTAATAGAACCAGTGATGCCAACGGTGTAGTTCAAACATGGATCGGTCTTCAATGGTATGAAACTGGCGGATACTTCAGAACACTTGACAATGCTGGTGTTGCCAGAAGATTTGTCACAGAAAATGAAAATCAAACTTTAACCAACAAAACTTTAAACAATGCTTCCTTTACAGGAACTACTGACATTGGTGTAGCAACTGCCACAACCCTCAATGGTCTAACTATTAGTCCAGTCATTAGTTCTACACTGGACTTTGCTGATCAAAAAACTTTGACAGTAAATAACACCATGACACTTAGCTCCACAGATGGAGCTGTCATTAACTTTGCTAACGGAGGAGGTGCTGGTAGTCAAGTAGCATACTCATCTTACAACTTGGGTCAGTTCTCTACTACAACTTCTGTTCAACTTAGAGGTACTGTTAGTGATCCAACTGGTAGCGGACAATTGGTATTCAACACCACTCCAGTTATTTCTACTGCTATTACTACACAGGATGCTTCTTTCTCAGTATTCAACACCAATGCCACTTCAATCAATGCTTTTGGTGCTGCTACTGCTCTAAATCTTGGTGCTACTACAGGTACAACTCTTGTTAGAAATGATTTAGATGTCAATGGTAACGTAGTATTGAACACTAACGATACAGATACATTTACTGTTGAAGGTATTCCAAACTTCGACAAGAATGACATTACTATTCGTGGAACTGCTACCTCGCCAATGACTATCGGCAGAGGTAATGGTTCTGTTTCAAGTAATACTGCTTTAGGTACTGAAGTTTTATCAGCAAACCAAAGTGGATCTCAAAACACTGGTGTTGGTTTTGAAGCATTAGCATCAAATGTTTCTGGTCTTGGTAACACTGCTGTTGGTGATGGAGCACTAAGTTTTTCTGATGTTGGTAGCAACAACGTAGCTGTCGGTAAGAATGCTGCTGGATCAAGCACCAGTGGAGACAATAACGTAGCGGTCGGTGACAATGCTATGTATGGATCTTCTGCTGGAGATGACAATGTTTGTATCGGTGCTTATGCTGGTTATAACATGACTGGTAATGGCAACGTTCTGATCGGTAGTGGTAGACCAATTGGCGATCCTGCTATTCCTGGTGCTACATATCAACCTCCTTCATCTGGTGGCAGTGTTCAGTTAGTTATCGGTAGCACCACAGAAGTTTCGGGATCAAGAGTATCTGGTACATGGATTAAGGGCGATAACCTATTCAATGTCACCATGGAAAACGACCTTTCTGTTGGTGGCGAATTGGTTGTTGGAGGTAACCTTACTGTTAATGGTACAACTACAACTATTAATACTCAAAATATTCAAATTGATGACAATGCTCTGGAGTTGGCAGCAGTACAACTTGCTCAGTTCTCTGGTAATGTCACAAACGGAAGTCCTTTTGTTACTAACGTCGAAGTATTCACTGGCGTTGTTGTTGGTATGACAGTCAACGTTGTTTCTGGTACGTCACTCCCAGCAGGAACAACAACTGTCACAAGCGTTGATCCAGACAATGGCACTATTGGATTATCTCAAAACATTACTGGTTCTGGTGGTACTGGTGTATTTGAAGCACTGGGTCCAACAGATGAGGCAGCTAACGGTGGTGGTTTGATTCTCAAGGGAACTACGACAGACAAAACCATTCTGTATGATAACACAAGAGCAGATAAGTATTGGAAGTTCTCAGAAAACCTTGAGATCAAAGCAAACAGACATATTGCTATCAACGGTACTGAACTACTTAGTGGTACTACGTTAGGTACAACTGTTGTCAACTCTTCACTAACATCTGTTGGTACACTGACTGGTCTTGCTGTTAATGGAGCAGCATCATTCGGCGGAAAGATCAAAGAGAGCAACGACAATAACTTCACCACTTCATTAGCACCCGATGGTTCTGGTGTTCTTACTATCAACACTGCTACATCTAACACGATCTGTGGTACACCAACAGCAGCAGCAATCACTGAGTGGGCATTCACTAATGTCAATCTAAATAATGGTGAATCTCTAACTATCACTTTGATCTTGGCATCTAACACCACTGCTCTCTATGGTGATGCTTGTAGTATCGATGGCAACTCAGTTACAAATGGTGTTAAGTGGTCTGGAGGTTCACCACCAACACCAACCAACAACACGGATATTTTAACATTCGTAATGGTGAAAGATGGATCTGGAAATATCCAGGTATTTGGACAAGGTAACACAGACTTCAGCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
e3b2960da6a1fe606fa061d207151d539e88361565c8b37850f76426b6ce92db
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2748
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Isolation and Genome Sequence of a Novel Cyanophage S-H9-2 from the Yellow Sea, China Jiang,T. and Luo,L. 2019-04-04 — GenBank