Protein

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Genbank accession

XWX34838.1 [GenBank]

Protein name

tail protein

RBP type

TSP

Evidence RBPdetect

Probability 0,84

Protein sequence

MSNFDLVLDTFDGKISEVLTDVDFESFKYEYEINSTRTISFIIEKTLRNKDIFDNIQNEGTINYKGQLYVIKSLSLSFDNISIKKEIVAHHIMYEFQNHFIDRDLENEQLNADISDNAPVPKYTLKQVLEFGFRDNPLGYKYKIVGDFPEALEIPEALGDENGIEYLVKHAETFDYIIFGDNKTIYIYEPDKFYKESGVVIRQTLNSEGVSSTINTSDLRTWVIGYGKKKTKSETKNYNPIKTPSLTLNGKFIKTGTWRTETKGDSYEVNVDCLWGNETLDFNFKRGPKGGMWEFYLDDNKFLTASGWYRTMTTDKITVAKNLSKGRHKFKAVFIGPDPNINYKDHKPTGFIGTEKAVILNLTAVLKGEDLYHYKYEYKSPNFKKFPSKKAKTIYEDNAKDLKDLQEKVIKEVNDEPTVEFSATYNGEDVLNERNTVYLKHEPLGFSTELKIVKLTEYHPILNKHVEVEFSNAKKDIVDIQQAINSNILKSSRTGNAVQSDNRITAVSVGSV

Physico‐chemical properties

protein length:	512 AA
molecular weight:	58775,54680 Da
isoelectric point:	5,82801
aromaticity:	0,11719
hydropathy:	-0,57090

Domains

Domains [InterPro]

G3DSA:6.20.110.10
ATT
2–89

G3DSA:6.20.110.10 G3DSA:3.55.50.40 DC_1309 IPR010572

IPR044051
ENZ
7–91

IPR044051 IPR010572

DC_1852
ATT
7–101

DC_1852

XWX34838.1

1 512

Architecture

ATT

STR

ENZ

ATT 2-101 | STR 102-374 | ENZ 375-484 |

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
G3DSA:6.20.110.10	ATT	G3DSA:6.20.110.10	2	89	Merged direct domain	G3DSA:6.20.110.10	N-terminal	Low	Positional only	47 proteins / 47 hits
IPR044051	ENZ	DC_0346	7	91	InterPro cluster	Prophage endopeptidase tail, N-terminal	N-terminal	High	Text match	59 proteins / 59 hits
DC_1852	ATT	DC_1852	7	101	Novel HMM	DC_1852	N-terminal	Low	Positional only	4 proteins / 4 hits
G3DSA:3.55.50.40	STR	G3DSA:3.55.50.40	91	194	Merged direct domain	G3DSA:3.55.50.40	Central	Low	Positional only	63 proteins / 63 hits
IPR010572	ENZ	DC_0675	116	484	InterPro cluster	Tail spike domain	Central	High	Text match	419 proteins / 419 hits
DC_1309	STR	DC_1309	195	374	Novel HMM	DC_1309	Central	Low	Positional only	61 proteins / 61 hits
IPR010572	ENZ	DC_0675	375	480	InterPro cluster	Tail spike domain	Central	High	Text match	419 proteins / 419 hits

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout

N-terminal

Central

C-terminal

XWX34838.1

1 512

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	235	235	0,7881
Central domain	236	434	200	0,5363
C-terminal	435	512	77	0,0089

Note: Constraints were applied during segmentation.
Fixed 5 C-terminal predictions appearing before Central domain

Legend: N-terminal Central domain C-terminal

3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring

N-terminal
1-235

Central
236-434

C-terminal
435-512

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Staphylococcus phage PG-2021_68 [NCBI]	2815634	Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host	Mammaliicoccus sciuri [NCBI]	1296	cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Genbank protein accession

XWX34838.1 [NCBI]

Genbank nucleotide accession

MZ417342 [NCBI]

CDS location

range 9474 -> 11012
strand -

CDS

ATGAGTAATTTTGATTTAGTGCTAGATACTTTTGATGGTAAGATATCAGAAGTTTTAACAGATGTGGACTTTGAAAGTTTCAAGTATGAATATGAAATAAATAGCACAAGAACAATTTCTTTTATTATTGAAAAAACATTGAGAAATAAAGATATATTTGACAATATTCAGAATGAAGGAACAATCAATTATAAAGGTCAGCTATATGTTATAAAATCTTTATCTTTAAGTTTTGATAATATTAGTATAAAAAAAGAAATAGTAGCCCACCATATTATGTATGAATTTCAGAACCATTTCATAGACAGGGATTTAGAAAATGAACAATTAAATGCAGATATATCTGATAATGCCCCTGTACCTAAATATACTTTAAAACAAGTGCTAGAATTTGGTTTTAGAGATAATCCTTTAGGGTACAAATATAAAATAGTTGGAGATTTTCCAGAAGCTTTAGAAATACCAGAAGCTTTAGGAGATGAAAATGGGATTGAATATTTAGTGAAACATGCAGAAACATTTGATTATATAATATTTGGTGACAATAAGACAATTTATATTTATGAGCCAGATAAGTTTTACAAAGAATCTGGTGTTGTTATTAGACAAACATTAAACTCAGAGGGTGTTTCATCTACAATAAATACTTCTGATTTAAGAACATGGGTTATAGGTTATGGTAAGAAGAAAACTAAATCTGAAACTAAAAACTACAATCCAATCAAAACACCATCTCTGACATTAAATGGTAAGTTTATTAAAACTGGAACATGGAGAACAGAAACAAAAGGAGATTCTTATGAAGTAAATGTTGACTGTTTATGGGGAAACGAAACATTAGATTTCAACTTCAAAAGAGGACCTAAAGGTGGTATGTGGGAATTTTATTTAGATGATAATAAATTCTTAACAGCTAGTGGTTGGTACAGAACTATGACAACAGATAAGATTACTGTAGCTAAAAACTTATCTAAAGGAAGACATAAGTTTAAAGCAGTATTCATAGGACCAGACCCGAATATAAACTACAAAGACCATAAGCCTACTGGGTTTATAGGAACTGAAAAAGCAGTTATTTTAAATCTTACTGCTGTATTAAAAGGTGAAGATTTATATCATTATAAATATGAATATAAGTCCCCTAATTTCAAAAAGTTTCCAAGTAAGAAAGCAAAAACAATTTACGAGGATAATGCAAAAGACTTAAAAGACTTACAAGAAAAAGTGATAAAAGAAGTTAATGATGAACCTACAGTAGAATTTTCTGCAACTTACAATGGAGAAGATGTCTTAAATGAAAGAAATACTGTATACTTGAAACATGAACCGTTAGGATTTAGTACAGAGTTAAAAATAGTAAAATTAACAGAATATCATCCTATATTAAACAAGCATGTAGAAGTAGAATTTAGTAATGCCAAAAAAGACATAGTTGATATACAACAAGCAATAAATAGCAATATATTAAAATCAAGTAGAACAGGAAATGCTGTCCAATCAGATAATAGGATTACAGCAGTTTCAGTAGGGAGTGTGTAA

Genome Context

Tertiary structure

PDB ID

459cf5adb5102ece3a8178c79dd2eb35cb95b159cc629c9da0a722b9dd7c1af8

ColabFold

Source ColabFold

Method ColabFold

Resolution 0,8616

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Literature

Title	Authors	Date	PMID	Source
Natural phage communities crosslink different species within the genus Staphylococcus	Goller,P.C., Elsener,T., Lorge,D., Radulovic,N., Bernardi,V., Naumann,A., Amri,N., Khatchatourova,E., Hernandes Coutinho,F., Loessner,M.J. and Gomez-Sanz,E.	2024	—	GenBank

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

3D Structure with Domain Coloring

Domain Coloring

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence

Literature