Protein

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Genbank accession
ARW59021.1 [GenBank]
Protein name
putative tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,67
Protein sequence
MQGVSQQVPRERLDGQVSVQLNRLSDVVNGNRRRPGARYLADVPTPTQYDDRVFASYVDVQDTANHVIINTETGQLLILSEDFTTTLHSSTQAYLVASAASAIQTASLRGYLYLANTEKAPAKVYGSTAQQDPSKTGFYFVRTPAFQKDYDITLSNSTGTYTYTYRTPTGTGSGDADLAKPSYIISDLLAKINAQTGTHGITATAYDAYMFLSSNTVSLSVTTNAGSTYATGSNQSRVNVVSDLPARLPAVGNGALVAVGTTERNFVWYQYDSATSVWKEAGAYGSPTGFSNMPIRISLGGVYTVETPAYEGRLAGSDETNEDPGFIDNGVTGFGAYQGRLVILAGPEVCMSAAGNPLRWYRSTVTALLSDDPINIFSGAATSTNFRHCVQFNKDLLLFARSCQAVVPSSNAAITPQTAQIVITSGYTTDTLAQPGVVGRSVLYSMPRTENFAGVLEIIPSNTTDSQYTSNDITAHIPRYLPGRIRSIVSSTTGNSSAFVCTGDNRSLFIQDYLWSGDEKVQSAWHQWSLPYPVVCIWFVRDRIYIGLRDGTALLVVTVEPQAGTTINNYVRPFSDVYMRVTITNKQFVLPERLRDAVTAGERLFITFADTSMGGMWVGYESINPSTFVVTTVRNVPDGEYFVGLRYTSVLSPTPPLVRDANGVVIGTSRTLLTRYELTLKDSGEFHAVITDSSRTLTDGEYSSLVYSSTELLPNNPTDASLGRAIIPVRAQAQDTVATFEANADTDLCILDIEYVLQYRARRKRI
Physico‐chemical
properties
protein length:766 AA
molecular weight: 83376,22480 Da
isoelectric point:5,39444
aromaticity:0,09661
hydropathy:-0,14530

Domains

Domains [InterPro]
DC_0058
STR
1–766
DC_0058
IPR058003
TTP
2–766
IPR058003
ARW59021.1
1 766
Architecture
STR
STR 1-766
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ARW59021.1
1 766
Domain Start End Length (AA) Confidence
N-terminal 1 128 128 0,9808
Central domain 129 330 203 0,3350
C-terminal 331 766 435 0,1082
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-128
Central
129-330
C-terminal
331-766

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage vB_PatP_CB5
[NCBI] 		1983582 Uroviricota > Caudoviricetes > Autographivirales > Corkvirinae > Phimunavirus
Host Pectobacterium atrosepticum
[NCBI] 		29471 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ARW59021.1 [NCBI]
Genbank nucleotide accession
KY953156 [NCBI]
CDS location
range 27829 -> 30129
strand +
CDS
ATGCAGGGCGTGAGCCAGCAGGTACCCCGCGAGCGCCTAGATGGTCAGGTATCAGTACAGTTGAACCGTTTATCCGATGTGGTGAACGGGAACCGTAGACGCCCCGGCGCACGGTACTTAGCAGATGTACCTACACCAACGCAGTACGATGACCGTGTATTCGCCTCGTACGTAGACGTGCAGGACACAGCCAATCACGTTATTATTAATACAGAGACGGGCCAGTTATTAATTCTATCCGAAGACTTTACTACCACTCTACATAGTAGCACACAGGCGTACCTAGTGGCCTCTGCTGCTTCTGCTATACAGACAGCCTCACTAAGAGGTTACCTGTACCTTGCAAACACTGAGAAGGCTCCTGCGAAGGTTTATGGTAGTACTGCGCAGCAAGACCCCTCTAAGACGGGCTTCTACTTTGTACGTACACCTGCATTCCAGAAAGATTATGATATTACGCTTTCTAATAGTACTGGAACTTACACGTACACGTACCGCACACCGACAGGTACCGGTTCGGGTGATGCAGACTTAGCCAAGCCTTCTTATATTATCAGCGATTTGCTGGCTAAGATTAATGCACAGACTGGTACACACGGGATTACAGCTACAGCATATGATGCGTACATGTTCCTGAGTAGTAACACTGTCTCTTTATCTGTAACCACTAATGCTGGGAGTACTTACGCTACGGGTAGTAACCAGTCGCGTGTGAATGTAGTATCTGACCTCCCTGCGCGTTTACCCGCTGTGGGTAATGGTGCGTTGGTAGCGGTCGGTACAACCGAGCGTAATTTTGTGTGGTACCAGTATGATTCCGCTACCTCCGTATGGAAAGAAGCCGGTGCGTACGGAAGCCCTACAGGCTTCTCCAATATGCCTATTCGTATCTCATTGGGTGGTGTCTACACAGTAGAAACCCCAGCTTACGAGGGCCGCCTAGCAGGCTCTGATGAGACTAACGAGGACCCCGGCTTTATTGATAATGGGGTAACTGGTTTCGGTGCATACCAAGGCCGCCTAGTTATTCTGGCTGGCCCAGAGGTGTGTATGTCAGCAGCAGGGAATCCCCTGCGTTGGTACCGTAGTACAGTAACAGCACTGCTCTCAGACGACCCTATTAATATCTTCTCAGGCGCAGCAACAAGTACTAACTTCCGACACTGTGTGCAGTTCAACAAGGACTTACTCCTGTTTGCTCGTTCGTGTCAGGCGGTGGTTCCTAGTAGCAATGCTGCTATCACTCCGCAGACGGCGCAGATAGTTATCACCTCTGGATACACCACTGATACACTCGCTCAGCCGGGTGTGGTAGGGCGTTCTGTGTTGTACAGTATGCCCCGCACTGAGAACTTTGCAGGTGTGTTGGAGATTATCCCAAGCAACACTACGGACTCCCAATACACCAGCAATGATATTACAGCACATATCCCTAGGTATTTACCGGGACGCATACGTAGTATTGTATCCAGTACCACCGGGAACTCCAGTGCGTTTGTCTGTACGGGAGATAACCGGAGCCTGTTCATCCAAGATTATTTATGGTCGGGTGATGAGAAAGTGCAGAGTGCTTGGCACCAATGGTCATTACCGTACCCCGTGGTATGTATTTGGTTTGTACGTGACAGGATTTATATCGGTCTACGGGACGGCACAGCACTCCTAGTAGTTACAGTTGAACCGCAAGCGGGTACCACTATTAACAACTACGTACGTCCGTTCTCCGATGTGTACATGCGTGTTACTATCACCAATAAACAGTTCGTCCTACCGGAACGCTTACGAGACGCTGTAACGGCTGGGGAACGCTTGTTCATTACCTTTGCTGATACAAGCATGGGGGGAATGTGGGTAGGTTACGAGAGTATCAATCCAAGCACCTTTGTTGTGACCACAGTACGTAATGTTCCAGACGGGGAGTACTTCGTGGGCTTACGCTACACCAGTGTACTCAGTCCTACGCCCCCGCTGGTGCGGGATGCTAATGGTGTTGTTATAGGCACTAGCCGTACGCTGTTAACACGATACGAGTTAACCCTTAAAGACTCTGGAGAGTTCCACGCCGTAATCACGGATAGCTCTAGAACACTAACAGATGGGGAGTACTCCAGCCTAGTGTACAGTAGCACTGAGCTGTTGCCTAATAACCCAACCGATGCATCATTAGGTCGGGCTATTATACCGGTGCGTGCTCAAGCACAGGATACTGTGGCTACCTTTGAGGCTAATGCTGATACCGACTTATGTATCTTAGATATTGAGTACGTCCTGCAATACAGGGCACGGAGGAAAAGAATATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
b0b7acdaa16bbb5819849776e1a569dae40ca6e81d5a34b2eec87a125d843470
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8736
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Pectobacterium atrosepticum Phage vB_PatP_CB5: A Member of the Proposed Genus 'Phimunavirus' Buttimer,C., Lucid,A., Neve,H., Franz,C.M., O'Mahony,J., Turner,D., Lavigne,R. and Coffey,A. 2018 30050020 GenBank