Protein

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Genbank accession
WPK38383.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 0,93
Protein sequence
MTWEDVAVSTSSTKQPTRQFGRALKLEVSNGKDEGIIISNLRVTFDIQKGNTKHPNKATITVFNLTESNRYKLTSGTWDYVRLSVGYGLDNIVYRLIFEGDITRANDQRNGLDIQTVLECGDARKSYNDGFVNTTLAAGSTYDSVVDVCLASVPNVEEGYVCLDSNKPAFLRARTLFGQTHSILDQVAAANKATWSIQDNKLNIIPNDSVTDYDVVVLSESSGMIGAPRGTDKGLEVTCNLNPTLAIGGLVQVNSMFTQYNGQYKIDTIRFRGDNKPKGPWRADLTVLGGQFAKKVRRLKKPRKLSKIEYDYVTEPGVDHTVGGGS
Physico‐chemical
properties
protein length:326 AA
molecular weight: 35874,98320 Da
isoelectric point:8,51545
aromaticity:0,07975
hydropathy:-0,38466

Domains

Domains [InterPro]
NF047561
Unmapped
20–275
NF047561
IPR054496
ATT
30–272
IPR054496 DC_2275
IPR054496
ATT
40–272
IPR054496
WPK38383.1
1 326
Architecture
ATT
RBD
ATT 30-272 | RBD 273-326
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WPK38383.1
1 326
Domain Start End Length (AA) Confidence
N-terminal 1 322 322 0,6797
Central domain 323 322 1 0,2154
C-terminal 323 326 3 0,8203
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-322
Central
323-322
C-terminal
323-326

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage AV127
[NCBI] 		3077272 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WPK38383.1 [NCBI]
Genbank nucleotide accession
OR352957 [NCBI]
CDS location
range 29432 -> 30412
strand +
CDS
ATGACATGGGAGGACGTTGCAGTGTCTACATCGTCGACAAAACAGCCTACCCGTCAGTTTGGCCGCGCGTTAAAGCTTGAGGTCAGCAACGGTAAAGATGAAGGCATAATCATCTCAAATCTTCGTGTTACCTTTGACATTCAAAAGGGTAACACGAAGCATCCAAATAAAGCGACAATCACAGTGTTCAACTTGACTGAATCCAACCGTTATAAGTTGACGTCAGGTACCTGGGATTACGTCCGTCTCTCTGTGGGTTACGGTCTTGACAACATAGTTTATCGCTTGATATTCGAAGGCGATATTACTCGGGCTAATGACCAACGGAATGGCCTTGACATTCAGACTGTTCTCGAATGTGGCGATGCCCGTAAATCTTACAACGATGGCTTTGTTAATACGACGCTAGCTGCTGGTTCTACATATGACAGTGTTGTTGACGTTTGCCTGGCTAGCGTGCCAAACGTTGAAGAAGGGTACGTCTGCCTTGACAGCAACAAACCAGCTTTCCTGAGAGCACGTACTCTGTTCGGACAAACGCACAGCATACTCGACCAGGTTGCTGCTGCCAACAAGGCTACCTGGTCTATACAAGACAATAAACTCAATATCATTCCTAATGACTCTGTTACTGACTACGACGTTGTTGTGCTGTCAGAATCGTCTGGTATGATTGGTGCTCCTCGCGGCACAGACAAAGGTCTTGAGGTTACTTGCAACCTGAATCCTACTCTGGCCATTGGTGGTCTCGTACAAGTAAATTCTATGTTTACACAGTACAACGGACAGTATAAAATCGACACTATAAGATTTCGGGGTGACAATAAACCGAAAGGACCGTGGCGTGCTGACTTGACGGTTCTCGGTGGACAGTTTGCGAAGAAAGTTCGTCGACTCAAGAAGCCACGCAAGCTGTCGAAGATTGAGTACGACTATGTTACTGAACCCGGTGTTGATCATACAGTAGGCGGAGGTAGCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
a83420a8c0d2fb805b0493de3012aaefe7091c362b83eb4c544d98ca6c516944
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8777
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A collection of diverse bacteriophages for biocontrol of ESBL- and AmpC-beta-lactamase-producing E. coli Vitt,A.R., Sorensen,A.N., Bojer,M.S., Bortolaia,V., Sorensen,M.C.H. and Brondsted,L. 2023 — GenBank