Protein

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Genbank accession
AVO24347.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,82
Protein sequence
MADLPEQPAGWPGIPMISTSDPVLGGQDGPANRQAAALVSRLQMVRDLLDAATAALATLSPQVDQQVQTVNALQASVSSVQTSVQTVSGVATAAQTAASVADAKAVAAQTAATAKAVRMDLGSVTVTYTASTALVAGARSIAVACTGAQVGDAIFVAATNAIPDGYAVGAAQCLVADTIRVSVIYPALSIGNSFSIALRVFALR
Physico‐chemical
properties
protein length:204 AA
molecular weight: 20352,93700 Da
isoelectric point:4,80422
aromaticity:0,03431
hydropathy:0,50147

Domains

Domains [InterPro]
DC_1388
STR
1–202
DC_1388
AVO24347.1
1 204
Architecture
STR
STR 1-202 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Xanthomonas phage XPV3
[NCBI] 		2099862 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Xanthomonas oryzae pv. oryzae
[NCBI] 		64187 Pseudomonadota > Gammaproteobacteria > Lysobacterales > Lysobacteraceae > Xanthomonas > Xanthomonas oryzae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AVO24347.1 [NCBI]
Genbank nucleotide accession
MG944236 [NCBI]
CDS location
range 22474 -> 23088
strand -
CDS
ATGGCCGATCTTCCCGAACAACCTGCCGGCTGGCCCGGTATCCCGATGATATCGACGTCCGACCCGGTCCTAGGCGGTCAAGACGGCCCCGCCAATCGCCAGGCTGCGGCGCTGGTCTCGCGCTTACAGATGGTACGCGATCTCCTCGACGCCGCCACCGCCGCGCTGGCGACGTTGAGCCCGCAGGTCGACCAGCAAGTTCAGACGGTCAACGCGCTGCAAGCCTCTGTCAGCTCCGTGCAGACGTCCGTGCAGACGGTCAGTGGGGTTGCCACGGCGGCTCAGACCGCGGCCTCTGTGGCCGACGCTAAGGCCGTTGCCGCGCAAACGGCAGCCACGGCAAAGGCAGTCCGCATGGATCTGGGCTCGGTCACGGTCACTTACACGGCAAGCACCGCACTAGTGGCCGGCGCACGTTCGATTGCGGTGGCGTGCACCGGGGCTCAGGTCGGCGACGCGATCTTCGTGGCCGCGACCAACGCGATACCGGACGGCTACGCGGTCGGCGCGGCGCAATGTCTGGTCGCCGACACGATCCGCGTATCGGTGATCTACCCTGCGCTGAGCATCGGCAATAGCTTCAGCATCGCGCTACGCGTGTTTGCGCTGCGGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
796c0eb6cad04ea8b4eb0d2f8f89a10acde019fbc90f5714dca23f3bd0de94c6
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8641
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation, characterization and comparative genomics of Xanthomonas oryzae pv. oryzae bacteriophages Varga,I., Molnar,J., Gazdag,A., Szucs,D., Doffkay,Z., Valappil,S.K., Papp,S., Pinter,R., Vera Cruz,C.M., Ricardo,O., Vizi,T., Schneider,G., Rakhely,G. and Kovacs,T. 2019-07-03 — GenBank