Protein

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Genbank accession
WDY79111.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence RBPdetect2
Probability 0,94
Protein sequence
MARPGVSDNGPSDGGLLMAKIERKQGDTITVSETFDRPGSRSSQALDLSDAQSVQIYVDHPSSGDLVVNDTAEITDAANGMVEYTLGGTQTARQGKHRLEFVAEFAGGETFSYPQTGFVSLKVTDPAARELPIEELADGDASVTELAADAIRANTASAVDVMDALDLNNNPITSLPVPSNPADAARKDGLDTVASDLSSVESDLTSQVTRFDELAIDRGPISSRPTSGDYDDQMYYAVDQRILWRWDAGSSDWNAAGGLGVSSQRLPVTSYLDAVDVSTLAAGDVNLSGTLTGLLLGDAADVAGNPLQNVDTVTASGTAISVDSPVAGQSPQTETHLTTKGYVDSVAQGLDWQESVLERRNDPPATPSDGDRYLVDDAPTGDWSANADEIAEWDADAAAWVFYDPNEGWAVFVESINVLETFVDGAWVDFGSAIDHGALNGTGDDDHLQYLHVDGRRSLTGPLNADDNDLENVGAVSETENVVADAGASYDIDLSNGGVHKITLTQDCDITLSGIDAAASNSATLIVEQDGAGGHSLTWSTAVLWPRGNPPSVTDGAGEIDRLAFTYIDGDWLGSEAGAGFA
Physico‐chemical
properties
protein length:582 AA
molecular weight: 61011,27510 Da
isoelectric point:4,05003
aromaticity:0,06357
hydropathy:-0,27698

Domains

Domains [InterPro]
DC_0931
RBD
11–582
DC_0931
IPR021251
STR
356–428
IPR021251
WDY79111.1
1 582
Architecture
RBD
STR
RBD
RBD 11-355 | STR 356-428 | RBD 429-582
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Halorubrum tailed virus
[NCBI] 		2992037 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Halorubrum lacusprofundi
[NCBI] 		2247 cellular organisms > Archaea > Methanobacteriati > Methanobacteriota > Stenosarchaea group > Halobacteria

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WDY79111.1 [NCBI]
Genbank nucleotide accession
OP630575 [NCBI]
CDS location
range 13620 -> 15368
strand +
CDS
ATGGCCCGCCCAGGCGTGAGCGACAACGGGCCATCCGATGGAGGTTTACTTATGGCGAAAATCGAGAGAAAACAAGGAGACACGATCACGGTCAGTGAGACATTCGATCGCCCCGGCAGCCGGTCGTCGCAGGCGCTTGATCTCTCAGACGCACAGTCGGTACAAATATACGTCGACCACCCAAGCAGCGGCGATCTCGTGGTCAACGACACGGCCGAAATCACCGACGCCGCAAACGGGATGGTTGAGTACACGCTGGGCGGCACGCAAACCGCGCGCCAAGGAAAACATCGCCTTGAGTTCGTCGCGGAGTTCGCCGGCGGGGAGACCTTCAGCTACCCCCAGACAGGCTTTGTCTCGCTGAAGGTGACCGACCCCGCGGCCCGCGAGTTGCCGATCGAGGAGTTGGCCGATGGCGACGCCAGCGTGACGGAGTTGGCCGCCGACGCGATCCGAGCCAACACCGCCTCGGCGGTGGATGTCATGGACGCGCTCGATCTCAACAACAACCCGATCACCAGCCTGCCGGTTCCCTCCAACCCCGCCGACGCCGCGCGAAAAGACGGTCTCGACACAGTTGCGTCTGATCTATCGTCGGTCGAATCTGACCTAACATCACAAGTAACCCGCTTCGACGAACTGGCGATTGATCGCGGCCCGATCTCGTCGCGGCCGACCAGCGGGGACTACGACGACCAGATGTACTACGCGGTGGATCAACGCATCCTGTGGCGGTGGGATGCGGGATCATCCGACTGGAACGCCGCGGGCGGCCTCGGTGTGTCGTCGCAGCGCCTACCGGTAACGTCCTACCTCGACGCCGTCGACGTCAGCACACTGGCGGCGGGGGACGTCAACCTGTCCGGCACGCTGACGGGGCTCCTCCTCGGGGATGCAGCCGACGTCGCCGGCAACCCACTACAGAACGTCGATACGGTCACCGCCTCGGGGACCGCGATCTCGGTCGACTCACCCGTCGCCGGCCAGAGCCCCCAGACTGAGACGCACCTCACGACCAAGGGGTATGTCGACAGCGTCGCCCAGGGCCTCGACTGGCAGGAGAGCGTCCTCGAACGACGCAACGACCCACCGGCCACGCCAAGCGACGGAGATCGTTATCTCGTTGACGACGCGCCGACTGGCGACTGGTCGGCCAACGCGGATGAGATCGCGGAGTGGGATGCCGACGCCGCAGCGTGGGTGTTCTATGACCCTAACGAGGGTTGGGCGGTGTTCGTCGAGAGCATCAACGTCCTGGAGACGTTCGTCGACGGTGCTTGGGTCGACTTTGGCTCCGCCATCGATCACGGCGCACTCAACGGGACGGGAGACGACGACCACCTGCAGTACCTCCACGTCGACGGCCGGCGGTCGCTGACAGGACCCCTCAATGCCGACGACAACGATCTCGAAAACGTTGGGGCTGTCTCGGAGACCGAGAACGTGGTCGCCGACGCGGGAGCATCGTACGATATCGATCTCTCGAATGGCGGCGTGCACAAGATCACACTGACGCAAGACTGCGACATCACACTCTCAGGCATCGACGCAGCGGCCTCGAACTCGGCGACGCTGATCGTTGAGCAGGACGGGGCGGGCGGCCACTCGCTGACGTGGTCGACGGCCGTGCTGTGGCCTCGTGGCAACCCGCCGAGTGTCACCGACGGAGCTGGGGAGATCGACCGTCTCGCGTTCACGTACATTGATGGCGACTGGCTCGGGAGTGAGGCAGGGGCAGGGTTCGCCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
9dedb30c54acd2d667d4c99f532aecb1635fb0141bfdcb43290ed6fc99e6e1d9
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7609
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
In depth characterization of an archaeal virus-host system reveals numerous virus exclusion mechanisms Mercier,C., Thies,D., Zhong,L., Raftery,M.J., Cavicchioli,R. and Erdmann,S. 2022 — GenBank