Protein

View in Explore
Genbank accession
WKC56057.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MNLKSDKDVKIYRYPSTDQGTLGRMILPNGKEIVSLELPDRDNKVRVSRIDAGRYRCTKWRSKKFGNVWILHGTTGRTYILIHKGNVAGDTDLGYRTHSAGCILVGMSAGTLYGQLACLSSAQALRECHKALDQYDEFYINIEDY
Physico‐chemical
properties
protein length:145 AA
molecular weight: 16378,50500 Da
isoelectric point:9,04499
aromaticity:0,08966
hydropathy:-0,45793

Domains

Domains [InterPro]
IPR043732
STR
11–133
IPR043732
WKC56057.1
1 145
Architecture
STR
STR 11-133 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage CAU_VPP01
[NCBI] 		3061015 No lineage information
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WKC56057.1 [NCBI]
Genbank nucleotide accession
OQ858564.1 [NCBI]
CDS location
range 33232 -> 33669
strand +
CDS
ATGAATTTGAAGTCTGATAAGGACGTTAAGATCTACCGATACCCAAGCACTGACCAAGGTACTTTAGGGCGAATGATATTACCTAATGGCAAAGAGATCGTTAGTCTTGAGTTACCGGATCGAGATAATAAAGTCAGGGTTAGCCGGATTGATGCGGGGCGTTATCGTTGTACTAAATGGCGCTCTAAAAAGTTTGGCAACGTGTGGATCTTGCACGGTACTACGGGGCGAACGTACATCCTAATTCATAAGGGTAACGTCGCGGGGGACACGGATCTTGGTTACCGTACCCACTCAGCGGGGTGTATCTTAGTCGGGATGAGTGCGGGCACTTTATACGGTCAATTGGCTTGCTTATCAAGTGCGCAGGCTTTGCGTGAGTGCCATAAGGCGCTTGACCAATACGACGAGTTTTATATAAACATAGAGGACTATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3af445719b1b1f680fd34f0f39a7067b7e0d618fc04853dfbd56c0ef20f9fd95
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8239
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation, characterization, and application of bacteriophage on Vibrio parahaemolyticus cocktail biofilm to inhibit seafood contamination Kim,B., Ha,S., Byun,K., Choi,M. and Ashrafudoulla,M. 2024-07 — GenBank