Protein

View in Explore
Genbank accession
AYR04288.1 [GenBank]
Protein name
putative collagen-like protein
RBP type
TF
Evidence RBPdetect2
Probability 0,55
Protein sequence
MAYSKHTWTDNELITKEKLNHIEEGIANIELTPGPAGPQGQRGETGPQGPVGPAGAKGADAVIPKLDKIDELVGEDGATLLAGFNKLLKGLKAKGYMTAE
Physico‐chemical
properties
protein length:100 AA
molecular weight: 10450,73770 Da
isoelectric point:5,36187
aromaticity:0,04000
hydropathy:-0,45800

Domains

Domains [InterPro]
DC_1506
STR
1–84
DC_1506
G3DSA:1.20.5.320
STR
32–82
G3DSA:1.20.5.320
AYR04288.1
1 100
Architecture
STR
STR 1-84 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Clostridium phage CPD1
[NCBI] 		2420238 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Clostridium perfringens
[NCBI] 		1502 cellular organisms > Bacteria > Bacillati > Bacillota > Clostridia > Eubacteriales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AYR04288.1 [NCBI]
Genbank nucleotide accession
MH999280 [NCBI]
CDS location
range 4438 -> 4740
strand +
CDS
ATGGCTTATTCAAAACACACTTGGACTGATAATGAATTAATAACTAAAGAAAAATTGAATCATATAGAGGAGGGAATCGCTAATATAGAATTAACACCTGGACCGGCAGGACCTCAAGGACAAAGAGGAGAAACAGGACCTCAAGGACCAGTAGGACCGGCGGGAGCAAAAGGTGCTGATGCAGTAATTCCTAAACTTGATAAAATAGATGAATTAGTCGGAGAAGATGGTGCAACTCTTTTAGCGGGGTTCAATAAACTTCTAAAAGGCTTAAAAGCTAAAGGTTATATGACTGCAGAATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
790de5321162c3af2c84351bdc6b5815b0b996c96cf415d2e8d4add38ecdbe0a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8390
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Clostridium perfringens phage CPD1 Shin,D. and Ryu,S. 2022-11-17 — GenBank