Protein

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Genbank accession
AAM28405.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAARKGAVNRFTPVRGWVTEGNLANYGQDVALDVENMDIEKTGLTQRRFGLFAETSSEQFLSTFTATARARGLLAVKEWREAWGDKDVNMLIFHAGYKVHVVQDTAPLRDANILLTIDLLEAGIKLDGVIDSPVHISVGVGFAIITNPRIEPVLIKLDDVDDEGVPTLSYEPLTLLIRTRELLTPYTTGTNYGDTLTPEEEWNLYNSGWATITRATKDKSGSGTVYVNPVQYYFDKRGVYPSHSVLYNSMKQESAKEIVALNVFSPWADEKINFGTTTPPLGRYIHSAYYFDSAAILSLGIGNLTPPTSDGTTEGSGPAEEEISNPIGLDNIGTVNNLKLIAEGTVRWTVKDRPRCSGYHNGHVYFGDRDKNGKTRILVSQLVNSLDNIPKCFQDADPTAEEINDLIATDGFTMYPVGMGAPITMVEFNKRLLLLCTNGVWAIRGTSGGGATATDFTLDKVASVEFNSPQSVVDIGTAIVFWSERGIIAIGVNDFGDLTSNNLTENTIDEYYDSLDRDIIKNVKGTFINDENRVYWVVPNKQDSNGEYKTDGELVLVLNLDTGGFYKHTVSGGPLLHAPFRRLVNTRAEVSIPITETDGTVITDTLGDPVTVTRTVTTTGVDGLAYFASFDDGVNGQFNFIAEHQPWGFADWANVPNMTRVNYSSYVDFAYEYPEVMIGNISLPYIHSYYLTGIRVQTEQYTTETAHLSFHRVQAHQTTALGTVTFHKVDMMVSTGMQVISFHKDDLLRTEAVTLVNPDAETGDATGWTVTAGTLDVRTAAPLYQGSYYFWSDSNANFAAYQDIDPVGGGYITAGELANNVIEAKLSWAARGNTDLGTVYIECLDAIGTVLASTDTTRFSGHDTWTRYGDAVVLPTDTDTIRVWIVGTLVATNDVNYYVDDIQLNLEVHNV
Physico‐chemical
properties
protein length:911 AA
molecular weight: 100148,63910 Da
isoelectric point:4,64832
aromaticity:0,09989
hydropathy:-0,17640

Domains

Domains [InterPro]
G3DSA:2.60.120.260
STR
748–905
G3DSA:2.60.120.260
G3DSA:2.60.120.260
STR
750–905
G3DSA:2.60.120.260
AAM28405.1
1 911
Architecture
STR
STR 748-905 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AAM28405.1
1 911
Domain Start End Length (AA) Confidence
N-terminal 1 152 152 0,9901
Central domain 153 353 202 0,8887
C-terminal 354 911 557 0,3687
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-152
Central
153-353
C-terminal
354-911

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage VpV262
[NCBI] 		2907796 Uroviricota > Caudoviricetes > Zobellviridae > Vipivirus canadense >
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AAM28405.1 [NCBI]
Genbank nucleotide accession
AY095314 [NCBI]
CDS location
range 32977 -> 35712
strand -
CDS
ATGGCAGCTAGAAAAGGTGCAGTCAACCGTTTCACCCCAGTACGTGGGTGGGTGACGGAAGGCAACCTAGCTAACTATGGACAAGACGTAGCCCTTGATGTAGAGAACATGGACATCGAGAAGACAGGGCTTACTCAGCGTCGCTTCGGTTTATTTGCCGAGACTTCGTCTGAACAGTTCCTGTCTACCTTCACAGCTACAGCCCGTGCTCGTGGCTTGCTTGCCGTTAAAGAATGGCGTGAGGCTTGGGGTGACAAAGATGTCAACATGCTTATCTTCCATGCTGGTTATAAGGTTCATGTGGTGCAGGATACGGCTCCGTTACGTGATGCTAACATCCTACTCACCATCGACCTACTGGAAGCAGGCATCAAGCTTGACGGTGTAATCGACAGCCCAGTCCACATCTCTGTAGGTGTGGGCTTTGCTATCATTACCAACCCTCGCATTGAGCCAGTGCTCATCAAGCTGGACGACGTAGACGACGAAGGCGTACCTACGCTGTCGTATGAACCTCTTACTCTGTTGATTCGTACCCGTGAGCTATTGACCCCATACACTACTGGGACCAACTACGGTGATACGCTGACACCAGAGGAGGAGTGGAACCTGTATAACTCAGGCTGGGCTACCATCACTCGTGCCACCAAGGACAAGTCAGGCTCCGGTACGGTGTATGTCAACCCAGTGCAATACTACTTCGACAAGCGTGGCGTATACCCTAGCCACTCAGTGTTGTACAACTCAATGAAGCAGGAGAGTGCGAAAGAGATTGTAGCTCTGAACGTGTTCTCACCTTGGGCTGATGAGAAGATTAACTTTGGTACAACCACCCCACCATTGGGGCGCTACATCCATAGTGCGTACTACTTCGACTCAGCAGCTATCCTGAGCTTAGGCATCGGTAACTTAACCCCGCCTACCTCAGATGGTACTACCGAGGGTAGTGGTCCTGCCGAGGAGGAAATCTCCAACCCAATCGGACTGGACAACATTGGTACAGTGAACAACCTCAAGTTGATTGCTGAGGGTACTGTGCGCTGGACAGTTAAGGACCGTCCTCGCTGCTCAGGCTATCACAATGGACACGTCTACTTTGGCGACCGTGATAAGAACGGTAAGACTCGTATTCTTGTTAGCCAATTGGTGAACAGCTTGGACAACATCCCTAAGTGTTTCCAAGACGCAGACCCTACGGCTGAGGAGATTAACGACCTCATCGCAACAGATGGATTCACCATGTACCCAGTGGGTATGGGTGCACCTATCACAATGGTTGAGTTCAACAAGCGATTGCTATTGCTTTGTACGAATGGTGTGTGGGCTATCCGTGGCACATCAGGTGGCGGTGCAACTGCTACTGACTTCACCTTGGATAAGGTGGCATCGGTAGAGTTCAACAGTCCACAGAGTGTGGTGGATATTGGTACAGCGATTGTGTTCTGGTCAGAGCGAGGCATCATTGCCATCGGTGTGAATGACTTCGGTGATTTGACATCGAACAACCTGACTGAGAATACCATTGATGAATACTACGATTCACTGGACCGCGACATCATCAAGAATGTGAAAGGTACTTTCATCAACGATGAGAACCGTGTGTACTGGGTGGTGCCTAACAAGCAGGACAGCAACGGTGAGTACAAGACTGACGGTGAGTTAGTGCTCGTGCTTAACCTCGACACTGGTGGTTTCTATAAGCACACAGTGAGCGGTGGTCCATTGCTCCATGCTCCGTTCCGTCGATTGGTGAACACTCGTGCTGAGGTGAGTATCCCTATCACTGAGACAGACGGCACTGTCATCACTGACACATTAGGCGACCCTGTAACTGTGACCCGTACTGTCACCACAACTGGTGTAGATGGACTAGCTTACTTCGCGTCGTTCGATGATGGGGTGAATGGTCAGTTCAACTTTATTGCTGAACATCAGCCTTGGGGCTTTGCTGACTGGGCTAACGTGCCTAACATGACACGTGTGAACTACTCATCCTACGTGGACTTTGCCTATGAGTACCCAGAGGTGATGATTGGTAACATCTCGCTACCATACATCCACTCGTACTACCTAACAGGCATCCGTGTTCAGACAGAGCAGTACACCACAGAGACAGCACACCTATCGTTCCATCGAGTGCAGGCACACCAGACTACAGCACTAGGTACTGTGACGTTCCACAAAGTGGACATGATGGTGAGTACAGGTATGCAGGTTATCTCGTTCCATAAGGACGACTTGCTACGTACTGAGGCTGTGACACTGGTGAACCCTGACGCTGAGACAGGGGATGCTACAGGCTGGACTGTGACAGCAGGTACATTAGATGTGCGTACCGCTGCACCACTGTATCAAGGCTCGTACTACTTCTGGTCAGACAGCAATGCTAACTTCGCTGCATACCAAGATATCGACCCAGTTGGTGGCGGGTACATCACAGCAGGTGAGCTGGCTAATAACGTCATTGAGGCTAAGCTAAGCTGGGCTGCACGTGGTAACACTGACCTAGGTACTGTGTACATCGAGTGTTTGGATGCTATCGGTACAGTGCTGGCATCTACCGACACTACCCGTTTCTCAGGGCATGACACATGGACCCGTTATGGTGATGCAGTTGTGCTGCCTACTGACACCGACACTATCCGTGTCTGGATTGTAGGTACGCTAGTAGCAACGAATGATGTAAACTATTACGTAGACGACATCCAGTTGAATCTGGAAGTACACAATGTTTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
1074e32ace23b849c3d8fc06b9cdc3152f6d7ac6b2a3efd43e7e6191394bb7c3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5999
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The complete sequence of marine bacteriophage VpV262 infecting vibrio parahaemolyticus indicates that an ancestral component of a T7 viral supergroup is widespread in the marine environment Hardies,S.C., Comeau,A.M., Serwer,P. and Suttle,C.A. 2003 12781722 GenBank