Protein

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Genbank accession
YP_009821983.1 [GenBank]
Protein name
putative virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,86
Protein sequence
MKDIEIIDIDYSAKDPTFKKEDKVVVAKISGPWIIPEEGPVYADSVRVLKGGLDLIPGTDFEPVEEVTDLTLKTGKKVVLYIQLKQHIISGGGELDMIYQRVGLPIISTKKLIDTLEEMVIKGKPVDWDTGVTNKPATQYPSWHSHDIKNSAEMVGFGGLVELFSRLTWEQNTEGSKMQALLTQLQTEMYSKLDYTRKLKWGAIMTHSRNYRNPHGVVPGDVNSGNINNFATATPQEDSEGRRSDLRSTPAGLSRLISEASPVTEDYLVQNELPFGYYGSGIYLPPPITGSFEGLGGDIENSAFVREGNGWTVGLIRGYDGRVKNLYYVYTEDVRDRSNSSPWIHTYVQYVHPAITGAGKRANMVVSGSNQDVICLGDVAWGGDSMVKGRDQLWIGVTNSTFDPASHTLKPIDIVNKVVDKAAAVGGIYNMQAGMGTIARVGDWVYYIHSFSGATGDIPGNYLGGDQNWQQHFWRFKYSDLTNPAVTSIVLQPVNVTFDNLDRERRTNQPAFFMIKHKGTGTNVISEGALKFSRPVITADSHRRRQFLVVPNPNNKRYARVRILFVTYTTIRNIGGDGTRGLWQDLIVDYDWDVETNTWTIDKNWRKPTLDIDGPGNGTLTDINAPWNQSYSHASHTNQFVFVSGSWVPGVGYVSMGSVQTGVPPYMMSVSLFNDENDPTRDFYWANQPPSRWDSVGRFNNFRLKMVMRSPFGVAGFPRHYSDLYALTDGTRATPIEVFYAENEAQNQQYFYRIAETVASDNGYDYRETLQSDFIDRPIYGRKTNSNFGVVNGMTQNVGTTNRPMRKNERSFTAGHMSYTRTKLIANPGAAPSFTWKINESGQQVAHSIESNGDVIVNLAYDWRYDTPTKVLFCRPNANKQVRIPRSLWQDMVHSSIGAADLAKTLDYSVSFYIADQPGGGETPYSHWCVHYHTTDAPSITRTIAGIFTWSVVTTINGVRQIKFDGMQYPFNQSGNKQRPLRPGVTTNISAGPDHHAINADGTWTGVLFSTGTDVKHTHMEILDKGAGGTSNIEMCWQPGTQINVTGNMTGDKFFLRIQNGVVIEGSLGWSSNRAFNAEFSNQVFANAQHGWLNGVTSATSGGAICLLSPWNGQETPLGAVMDKYIMYGATYVEGNWSVFINSEVTVTFNGFSMMAKMQNWDLRDLSDVYKNQTFYIYCCANGSGAYYEVTKILRGHDANKILVATVKTDDFGIVTIERRQTFTISGFPITLARDMGVPASSGAVTEQGNYKFLKRSELFSG
Physico‐chemical
properties
protein length:1262 AA
molecular weight: 140490,07680 Da
isoelectric point:6,40487
aromaticity:0,11014
hydropathy:-0,38106

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009821983.1
1 1262
Domain Start End Length (AA) Confidence
N-terminal 1 266 266 0,9937
Central domain 267 465 200 0,8847
C-terminal 466 1262 796 0,4231
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-266
Central
267-465
C-terminal
466-1262

Taxonomy

  Name Taxonomy ID Lineage
Phage Edwardsiella phage pEt-SU
[NCBI] 		2562142 Uroviricota > Caudoviricetes > Chimalliviridae > Petsuvirus pEtSU >
Host Edwardsiella tarda
[NCBI] 		636 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009821983.1 [NCBI]
Genbank nucleotide accession
NC_048182 [NCBI]
CDS location
range 88348 -> 92136
strand +
CDS
ATGAAAGATATTGAAATTATCGACATCGACTATTCCGCCAAAGATCCTACTTTTAAGAAAGAGGATAAGGTTGTAGTCGCCAAGATCTCCGGACCTTGGATAATTCCTGAAGAGGGTCCCGTTTACGCGGATTCGGTCAGGGTTCTTAAAGGTGGGTTAGATCTTATTCCTGGAACAGACTTTGAACCAGTAGAAGAAGTCACAGACTTAACTTTAAAGACCGGTAAGAAAGTTGTTCTTTATATCCAGTTAAAACAACACATTATCAGCGGTGGTGGTGAACTGGATATGATTTACCAGCGTGTTGGGTTGCCGATTATTTCTACCAAGAAACTTATTGATACCTTGGAAGAAATGGTCATCAAAGGGAAACCTGTTGATTGGGATACCGGGGTTACTAACAAACCCGCTACTCAATATCCTTCCTGGCATAGTCACGATATTAAAAACTCTGCCGAGATGGTTGGGTTTGGTGGATTGGTAGAACTGTTTTCTCGTTTGACTTGGGAACAGAATACCGAAGGCAGTAAGATGCAGGCTCTGTTGACTCAACTTCAAACAGAGATGTACTCCAAACTGGATTACACACGCAAGTTAAAGTGGGGTGCGATTATGACGCACTCACGCAACTATCGGAACCCCCATGGTGTAGTTCCTGGCGATGTAAACTCCGGTAACATTAATAACTTTGCTACCGCTACCCCGCAAGAGGACAGCGAAGGTCGTCGTTCTGATTTACGTTCAACCCCTGCTGGTCTGAGTCGTTTGATCTCAGAAGCCTCCCCAGTTACCGAAGACTACCTGGTTCAAAACGAATTACCGTTTGGTTATTACGGTTCAGGTATTTATCTTCCACCACCAATTACCGGCTCTTTCGAAGGCTTGGGTGGGGATATCGAAAACTCCGCATTTGTGCGTGAAGGTAACGGTTGGACTGTTGGACTTATTCGCGGTTACGATGGCCGTGTTAAAAACCTGTATTACGTATATACAGAAGACGTCAGAGATCGTTCCAACAGTTCACCATGGATCCATACTTATGTTCAGTATGTTCACCCTGCTATCACTGGTGCGGGTAAGCGTGCTAACATGGTTGTCTCTGGTTCAAACCAAGATGTGATCTGCCTGGGCGATGTTGCTTGGGGCGGTGACAGCATGGTGAAGGGGCGTGACCAGTTATGGATTGGTGTGACTAACTCCACTTTTGATCCAGCTTCGCACACCCTAAAGCCAATTGACATCGTAAACAAAGTTGTCGATAAAGCCGCTGCTGTTGGTGGAATATACAACATGCAGGCTGGCATGGGAACAATTGCTCGTGTGGGCGATTGGGTCTATTACATCCATTCATTCTCCGGCGCTACTGGTGATATCCCTGGCAACTACTTAGGTGGTGATCAGAACTGGCAGCAACACTTCTGGCGATTCAAGTATTCTGATTTAACAAACCCTGCTGTAACATCAATAGTTCTTCAGCCGGTTAACGTTACCTTTGATAACTTAGACCGTGAACGCCGTACTAACCAACCTGCTTTCTTTATGATCAAACATAAAGGAACCGGTACCAATGTTATTTCTGAAGGTGCGTTGAAATTCAGTCGTCCAGTTATCACTGCGGATAGTCACCGTCGTCGTCAGTTTCTTGTGGTTCCTAACCCGAACAACAAACGGTATGCACGAGTAAGGATACTCTTTGTTACATATACCACTATTAGAAACATTGGTGGGGATGGTACTCGCGGTTTGTGGCAAGACTTGATTGTCGACTATGATTGGGATGTTGAAACCAACACGTGGACAATTGATAAAAACTGGCGCAAGCCTACCTTGGACATTGATGGTCCAGGGAACGGAACACTGACAGATATCAATGCGCCCTGGAACCAGTCATATAGCCATGCTTCTCATACCAACCAGTTTGTCTTTGTATCAGGAAGTTGGGTACCTGGTGTTGGTTACGTTTCAATGGGTTCTGTCCAGACAGGTGTACCGCCGTACATGATGTCGGTATCTTTGTTCAATGACGAAAACGATCCTACTCGTGACTTCTATTGGGCTAACCAACCGCCGTCTCGTTGGGACTCCGTTGGACGCTTTAATAACTTCAGATTGAAAATGGTCATGCGTTCGCCATTTGGTGTTGCTGGCTTCCCGCGTCATTACTCTGATCTTTATGCGCTGACTGACGGAACTCGCGCCACTCCAATTGAAGTTTTCTATGCGGAAAACGAAGCACAGAACCAACAGTACTTTTATCGTATTGCGGAAACGGTTGCCTCAGATAACGGATACGATTACCGTGAAACACTACAGTCTGATTTTATCGACAGACCTATCTATGGTCGTAAGACAAACTCAAACTTTGGTGTTGTAAACGGGATGACCCAGAACGTTGGTACTACTAACCGCCCAATGCGCAAGAATGAACGATCATTCACCGCAGGACACATGAGTTATACCCGCACCAAGTTAATTGCTAACCCAGGTGCTGCACCAAGCTTCACATGGAAGATTAACGAGAGTGGGCAACAGGTAGCGCACTCTATCGAATCGAATGGTGACGTGATTGTTAACTTGGCGTATGACTGGCGTTATGATACTCCGACCAAAGTGTTGTTCTGTCGTCCGAACGCTAATAAGCAGGTTCGTATTCCTCGTTCATTGTGGCAGGATATGGTCCATAGTTCCATTGGAGCAGCAGACTTAGCTAAGACTTTGGATTACTCGGTATCGTTCTATATTGCAGATCAACCAGGTGGGGGTGAAACACCATACTCCCATTGGTGTGTACACTACCATACCACCGACGCTCCATCAATAACGCGTACTATCGCTGGTATCTTTACTTGGTCTGTTGTAACTACCATCAATGGTGTTCGTCAAATTAAGTTTGATGGAATGCAATATCCATTCAACCAGTCAGGCAACAAACAACGCCCATTAAGACCTGGTGTAACCACAAACATTTCTGCAGGTCCTGACCACCACGCTATTAACGCGGACGGTACATGGACTGGTGTGCTGTTTAGCACAGGTACTGATGTTAAGCATACTCACATGGAGATTCTTGACAAAGGTGCAGGTGGTACGTCTAACATTGAAATGTGCTGGCAACCAGGTACTCAGATTAACGTAACGGGTAACATGACCGGTGACAAGTTCTTCCTGCGTATCCAAAACGGTGTGGTAATTGAGGGGTCGTTAGGTTGGTCCTCTAACCGTGCGTTTAACGCCGAGTTTAGTAACCAGGTGTTTGCTAATGCTCAACACGGTTGGTTGAATGGTGTTACGTCTGCAACCTCTGGTGGTGCTATTTGCTTACTGTCTCCATGGAACGGTCAGGAAACACCATTAGGTGCGGTAATGGATAAGTACATTATGTATGGGGCAACGTACGTTGAAGGTAACTGGTCAGTGTTCATTAACTCTGAAGTGACTGTAACCTTTAACGGTTTCTCAATGATGGCAAAAATGCAGAACTGGGATCTTCGTGATCTGTCCGATGTTTATAAAAATCAGACATTCTACATTTACTGTTGCGCCAATGGTTCGGGTGCGTACTATGAAGTTACAAAGATCTTGCGAGGTCATGATGCTAACAAGATCCTTGTGGCAACTGTTAAGACGGATGACTTCGGTATTGTAACCATTGAACGTCGTCAAACCTTTACTATCTCCGGGTTCCCGATTACTCTGGCCCGCGACATGGGTGTTCCGGCATCTTCTGGTGCTGTAACTGAACAAGGTAACTACAAGTTCTTAAAACGCAGCGAACTCTTTAGTGGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e6aedcfe8afd86d74120c4ca963d3f08fd85cd97da019cae955bfc5d0551de3e
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2649
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50