Protein

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Genbank accession
YP_009200509.1 [GenBank]
Protein name
long tail fiber protein proximal connector
RBP type
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MAQLMAGFGQGFVQTQVLSENNSVKYKLSVAGSNATSLPNPAYILLNDKPISSIQHQNGLNVWELDTTIGAIVYRKIYTFGINDSASANIAFIEYMNSITADTVIIITTSGNVNSSPSVDNWFKNAGSTNWFNNEILRNYKGSYAGIYRPRFKKVVSENRCYTDGSIFDSRAYLEIVYDTINDIGATGFPYRVCFDTNEYKTDSEIDIKRYPNGLFVTPYSDYLMSPGQKYMISFELFASASLISSGKTTQMNIRWFNDNAFVSGSSYEVNSTFGDQWVKFERIIDVPANTNGFTIVASRTNSVLISDGTSGVRNVIMAQVSRGDVPITSAAFGVNGIRMNKGIDGTTDKLLILPDVEDDPTGDIYSAEFIEVAPL
Physico‐chemical
properties
protein length:376 AA
molecular weight: 41485,98670 Da
isoelectric point:4,79513
aromaticity:0,11702
hydropathy:-0,14441

Domains

Domains [InterPro]
DC_0912
STR
1–375
DC_0912
PS52031
LEC
22–193
PS52031
IPR039477
STR
58–145
IPR039477
YP_009200509.1
1 376
Architecture
STR
STR 1-375 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009200509.1
1 376
Domain Start End Length (AA) Confidence
N-terminal 1 333 333 0,1736
Central domain 334 365 33 0,7769
C-terminal 366 376 10 0,6931
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-333
Central
334-365
C-terminal
366-376

Taxonomy

  Name Taxonomy ID Lineage
Phage Yersinia phage vB_YenM_TG1
[NCBI] 		1589265 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Tegunavirus
Host Yersinia enterocolitica
[NCBI] 		630 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009200509.1 [NCBI]
Genbank nucleotide accession
NC_028820 [NCBI]
CDS location
range 151799 -> 152929
strand +
CDS
ATGGCACAACTTATGGCTGGATTTGGACAAGGATTTGTCCAAACTCAAGTATTATCTGAGAATAATTCAGTTAAATATAAACTTAGTGTAGCGGGGTCCAATGCGACCTCGTTACCTAATCCCGCTTATATTTTATTGAACGATAAACCTATCAGTTCCATACAACATCAAAATGGACTTAATGTATGGGAATTAGACACAACAATTGGAGCTATTGTTTACAGAAAAATCTATACATTCGGAATTAATGATTCGGCTTCAGCTAACATTGCTTTTATAGAATATATGAATTCTATAACAGCTGACACTGTAATAATTATTACGACATCAGGTAATGTTAATTCAAGCCCTAGTGTTGATAATTGGTTTAAAAATGCCGGATCTACTAACTGGTTCAATAATGAAATACTTAGAAACTATAAAGGAAGTTATGCTGGTATATATCGTCCTAGATTTAAAAAAGTAGTTTCTGAAAACAGATGTTATACGGATGGGTCTATATTTGATTCAAGAGCGTATCTAGAAATAGTTTACGATACAATTAATGATATTGGCGCAACAGGATTTCCGTATAGAGTTTGTTTTGATACAAATGAATACAAAACCGATTCAGAAATAGATATAAAAAGATATCCTAATGGATTATTTGTTACGCCATATTCAGATTATTTGATGTCTCCTGGACAAAAATATATGATATCATTTGAATTATTTGCTTCGGCTAGTTTAATATCATCTGGCAAAACAACACAAATGAATATAAGATGGTTTAATGATAATGCTTTTGTGTCAGGTTCATCTTATGAAGTTAATAGCACTTTTGGGGACCAATGGGTCAAGTTTGAACGTATAATTGACGTTCCTGCAAACACTAATGGCTTTACTATCGTAGCATCTAGAACCAACTCAGTGTTAATATCGGACGGCACAAGCGGCGTAAGGAACGTTATTATGGCACAAGTAAGCCGCGGCGATGTCCCTATAACTTCTGCGGCTTTTGGGGTTAATGGTATAAGAATGAATAAAGGAATTGATGGCACAACTGATAAATTGCTTATTTTACCTGATGTGGAAGATGACCCAACTGGCGATATCTATTCAGCAGAATTCATAGAGGTTGCTCCTTTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
877270601464f1c9ee7d484ac9743fd25a28fd37e65aca1393470b92994c9fad
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6806
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of vB_YenM_TG1, a broad host range bacteriophage which infects Yersinia enterocolitica Leon-Velarde,C.G., Kropinski,A.M., Chen,S., Griffiths,M.W. and Odumeru,J.A. 2014-10-28 — GenBank