Protein

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Genbank accession
YP_009597273.1 [GenBank]
Protein name
tail fiber protein
RBP type
TSP
Evidence RBPdetect
Probability 0,75
TF
Evidence RBPdetect2
Probability 0,86
Protein sequence
MNLNKFATKEETYTKQEIDDKIDEIVPPEIDLTNYAKKDAANIFTKANIFTEAPSVEVDATLDNHVIRKKQFDNSIKEVKDLLSNVFSYKGSKPTYTEIEAIVDKKIGDVWYAEDTGYMYIWNSKTWYDLGKSFDASKFVDITSDQVAINGIKKFTGKLKALTPVDSDDVAILSWTTKQINDKVESVIGDLNSLNNEVSKDNLVNAINSVDDKFKTTAKTNKSNTFTGDQTYVDHILLESVPSERNHAVNLGYILDNPGGIKLPDHTALTQNSVTEITFGYANPVSYSAQQLKNVFLKDIVGNEYKAIMADKTSFTENPSKEMVVILSRTDYTKNIDVKFNITKTVDELKQYELKEGEVRVILSYDTVSVYSSGYGYGAMFARNANKKDGDLIYDYYSGSQNDITNNRKVSIKIDKLGINTPDIVSISMTTNGSEKLTVKTDTLDPVENTYESADMTYIHTPVSKIVGDVLYSNISQAIKSIHVLENNICSLKPASMELQLVRLKELNQTINNMLQSMFDESPVALKNGDYIDVSFSGSASYGTGYCGYVNIKDTIRDITYKAYKVSSNAFDTTSGTKVIAVLTSDNSKTNVTYSDSVSTLESYEVAENEILLEISFSTAKQYSAKYGYGAMLEYWGSVSDLCYDYYMGSNLDMDCPFKITLLKIGSSVKADTIQIGAPTFAGSLVMHLRKNTNDVINFLVSTGVNVTGRDGTESGSVYNLVEKSLKPLKVLTSEAHQSINGITTFNNKVYMNINNEKITDSKQLIHKEYLDKNIADNVAYNISNTPLVPYNDVSSLNNKKISIRISATTNNSSYSSGDTVVVSNFKIKLKGDDEYLKPYGVEVIDRENNKIGLNLIGDDTVYNDNDALLSTRPSDFNSSNVDLSSGSNALATVKTNGAYNYSGVYDIPNPFREYNKKYSLFLSNDGLKNPYYQVDINSSKQVDNISFQLFGTSATNPFLYSKDCKIELSVENTVVKTFNVKGSSENNSPVNINIDYKDGMFLISVLDSINYINNRINKNAELLTGSGKPNFSLNPNKIGSLYSDTTNKAVYMCIDNTFGANKWVNIVTGDEIKPSLRKIEITCNVNLRSGQYGGCMSGVKIGFDNGYASTKQIVKGLNSGQILLSLDGLGNLSGYSEVSSLTPSGQDIKVDVDTTGIYNDPSYHCVTNIFKEYLGNADQCSLWSDASVKQLKITLLSEKIPTKILYVGNGYYGQTSVSDVKAIWYYVNDSGDKIEGNVDNDLKVSDNVSETNDSSYIYAFNIN
Physico‐chemical
properties
protein length:1264 AA
molecular weight: 139964,90140 Da
isoelectric point:5,00839
aromaticity:0,09415
hydropathy:-0,37595

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009597273.1
1 1264
Domain Start End Length (AA) Confidence
N-terminal 1 275 275 0,9679
Central domain 276 498 224 0,6506
C-terminal 499 1264 765 0,1312
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-275
Central
276-498
C-terminal
499-1264

Taxonomy

  Name Taxonomy ID Lineage
Phage Campylobacter phage vB_CjeM_Los1
[NCBI] 		1904491 Uroviricota > Caudoviricetes > Connertonviridae > Fletchervirus Los1 >
Host Campylobacter jejuni
[NCBI] 		197 cellular organisms > Bacteria > Pseudomonadati > Campylobacterota > Epsilonproteobacteria > Campylobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009597273.1 [NCBI]
Genbank nucleotide accession
NC_041896 [NCBI]
CDS location
range 124278 -> 128072
strand -
CDS
TTGAATTTAAATAAATTTGCTACAAAAGAAGAAACATATACTAAACAAGAGATAGATGATAAAATAGATGAAATAGTACCACCTGAAATTGATTTAACTAATTATGCAAAGAAAGATGCAGCTAATATTTTTACAAAAGCTAATATTTTTACAGAAGCACCTTCGGTAGAAGTAGATGCAACACTAGATAATCATGTTATTAGAAAGAAACAGTTTGACAATAGCATAAAAGAAGTTAAAGATTTACTATCTAATGTATTTTCATATAAAGGATCAAAACCTACATATACAGAAATAGAAGCCATTGTTGATAAAAAGATAGGTGATGTATGGTATGCTGAAGATACTGGATATATGTATATATGGAATAGTAAAACTTGGTATGATTTAGGTAAATCTTTTGATGCTAGTAAATTTGTTGATATAACTTCAGACCAAGTAGCAATAAATGGTATTAAAAAATTCACAGGAAAATTAAAAGCATTAACACCTGTTGATTCTGATGATGTAGCTATTTTGAGCTGGACAACAAAACAAATAAATGACAAAGTTGAATCTGTTATTGGTGATTTAAATTCATTAAATAATGAAGTTTCTAAAGATAATTTAGTTAATGCTATAAATAGTGTAGATGATAAGTTTAAAACAACAGCTAAAACCAATAAATCAAATACATTTACAGGTGATCAAACTTATGTAGATCATATTTTACTAGAATCTGTTCCTTCTGAAAGAAATCATGCAGTTAATTTGGGATACATTTTAGATAATCCTGGAGGTATAAAACTTCCTGATCATACAGCACTTACACAAAATTCTGTTACAGAAATAACTTTTGGATATGCAAATCCAGTATCATATTCTGCACAACAATTAAAAAATGTATTCCTAAAAGATATAGTAGGTAATGAATATAAAGCTATAATGGCAGATAAAACATCATTTACAGAAAATCCTTCAAAGGAAATGGTTGTTATACTTTCTAGAACTGATTATACAAAAAATATAGATGTTAAGTTTAATATAACTAAAACAGTTGATGAGCTTAAACAATATGAGCTTAAAGAAGGAGAAGTTAGAGTTATACTATCTTATGATACTGTATCTGTTTATTCTAGTGGGTATGGTTATGGAGCTATGTTTGCTAGAAACGCTAATAAAAAAGACGGAGATTTAATATATGATTATTATTCTGGAAGTCAAAATGATATAACAAATAATAGAAAAGTATCTATAAAAATAGATAAACTTGGTATTAATACTCCAGATATTGTAAGTATATCTATGACTACAAATGGTTCTGAAAAATTAACAGTAAAAACAGATACACTAGATCCTGTGGAAAATACATACGAATCTGCAGATATGACTTATATCCATACTCCTGTCAGCAAAATTGTAGGAGATGTTCTTTATAGTAATATATCTCAAGCAATTAAATCAATACATGTATTAGAAAATAATATATGTTCTTTAAAGCCTGCAAGTATGGAATTACAACTTGTAAGGCTCAAAGAACTTAATCAAACAATAAATAACATGTTGCAATCTATGTTTGATGAGAGTCCTGTAGCACTAAAAAATGGAGATTACATAGATGTTTCATTTAGTGGTAGTGCAAGCTATGGAACAGGATATTGTGGGTATGTTAATATAAAAGATACTATAAGAGATATTACATATAAAGCTTATAAAGTATCTTCAAATGCTTTTGATACAACTAGTGGAACTAAAGTTATTGCAGTTCTCACTTCTGATAACAGTAAAACAAATGTAACTTATTCTGATAGTGTATCAACATTAGAATCTTATGAAGTAGCAGAAAATGAAATATTATTAGAGATATCATTTTCAACTGCTAAGCAATACTCTGCTAAATACGGGTATGGAGCTATGTTAGAATATTGGGGTTCTGTATCTGATTTATGTTATGATTACTATATGGGTTCAAATCTAGATATGGATTGTCCATTTAAAATAACATTGCTCAAAATAGGAAGTTCTGTTAAAGCTGATACTATACAAATAGGTGCTCCTACTTTTGCAGGATCATTAGTTATGCACCTAAGAAAAAATACAAACGATGTTATCAATTTCCTTGTATCTACAGGTGTGAATGTAACAGGAAGAGATGGGACTGAAAGTGGATCAGTATATAATTTAGTAGAAAAATCATTGAAACCATTAAAAGTTCTAACATCTGAAGCACATCAATCTATAAATGGTATAACTACTTTTAATAATAAAGTGTATATGAATATAAACAATGAAAAAATTACAGACAGTAAACAACTAATACATAAAGAATACCTAGATAAAAATATTGCAGACAATGTAGCATATAATATTAGTAATACTCCATTAGTACCTTACAATGATGTTAGTTCTTTAAACAATAAAAAAATATCTATAAGAATATCTGCGACAACTAATAACTCTAGTTATTCATCTGGTGATACAGTAGTAGTTAGTAATTTCAAGATAAAACTTAAAGGAGATGATGAGTACCTTAAACCTTATGGGGTTGAAGTTATTGATAGAGAAAATAATAAAATAGGTTTAAATTTAATAGGAGACGATACAGTATATAATGATAATGATGCTTTATTATCTACAAGGCCTTCTGATTTCAACTCATCTAATGTAGATCTTTCTAGTGGAAGTAACGCCTTAGCAACTGTTAAAACTAATGGAGCTTATAATTATAGTGGAGTTTATGATATACCAAATCCTTTTAGAGAATATAATAAAAAATACTCTTTATTCTTAAGTAATGATGGGTTAAAAAATCCTTATTACCAAGTTGATATAAATAGCTCCAAACAAGTTGATAATATATCTTTTCAATTATTTGGAACTAGTGCTACAAATCCTTTTTTATATTCTAAAGACTGTAAAATTGAATTATCTGTAGAAAATACTGTTGTAAAAACCTTCAATGTTAAAGGAAGCTCCGAAAATAATAGTCCTGTAAATATTAATATAGATTATAAAGATGGTATGTTCTTGATATCTGTTCTTGATTCTATAAATTACATAAATAATAGAATTAATAAAAATGCAGAATTACTTACAGGGTCAGGCAAACCTAATTTTTCATTAAACCCTAACAAAATAGGTTCTCTATACTCTGATACAACTAATAAAGCTGTATATATGTGTATAGACAATACTTTTGGTGCTAATAAATGGGTGAATATAGTAACAGGGGATGAAATTAAACCAAGCCTTAGAAAAATAGAAATCACTTGTAATGTAAACTTAAGAAGTGGCCAATACGGTGGTTGTATGAGCGGTGTTAAAATAGGATTTGATAACGGGTATGCTTCTACAAAACAAATAGTTAAAGGGTTAAATAGCGGTCAAATATTGCTATCTCTAGATGGGTTGGGTAACCTTTCTGGATATTCTGAAGTTAGTTCTTTAACTCCTAGCGGTCAAGATATAAAAGTTGATGTGGATACTACTGGGATATATAATGACCCTTCATATCATTGCGTTACTAATATATTTAAAGAATACCTTGGCAATGCTGATCAATGTTCGCTATGGTCTGATGCTAGTGTTAAACAACTTAAAATAACTTTATTATCTGAAAAGATTCCTACCAAAATATTATATGTAGGAAACGGATATTATGGTCAAACATCTGTTTCTGATGTAAAAGCTATATGGTATTATGTAAATGATAGCGGAGACAAAATAGAAGGTAATGTAGATAATGATCTAAAGGTAAGTGATAATGTTTCTGAAACAAACGATAGTTCTTATATATATGCGTTCAATATAAATTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
4c53960e75b5dacff55fc972b39b7905f7cd9a80cb61bb3dc1058f49bbfede9d
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2801
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome analysis of vB_CjeM_Los1, a virulent Campylobacter bacteriophage isolated in the Republic of Ireland Coffey,A., McAuliffe,O. and Bolton,D. 2006-06-30 — GenBank