Protein

View in Explore
Genbank accession
AFU63931.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,86
Protein sequence
MADLKANSTVGGAPIWHKGNFPLSPVGDTLLYKTFKVYTEFDKPQAVDNDFVSKAAGGEYLKNVNFKEGLSFSDKDGASVFIGVPKNTTATATYTASIKLTGQFALETPDNKPFIIFDPNESFSPDVYRLTVMGDMLSRQIYDESGRVFSPGNTPSKAQVGLDLVDNAKQVQLEKSGVQTMTGVLAAPNFISTNPATADNHVARFDQIVIKDSIQDFGYYS
Physico‐chemical
properties
protein length:221 AA
molecular weight: 24014,64050 Da
isoelectric point:5,02755
aromaticity:0,10860
hydropathy:-0,27104

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AFU63931.1
1 221
Domain Start End Length (AA) Confidence
N-terminal 1 199 199 0,6137
Central domain 200 210 12 0,0137
C-terminal 211 221 10 0,9553
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-199
Central
200-210
C-terminal
211-221

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage STML-198
[NCBI] 		1204531 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Gelderlandvirus
Host Salmonella
[NCBI] 		590 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFU63931.1 [NCBI]
Genbank nucleotide accession
JX181825 [NCBI]
CDS location
range 28985 -> 29650
strand +
CDS
ATGGCCGATTTAAAAGCAAATAGTACAGTAGGCGGAGCTCCGATATGGCATAAAGGAAATTTTCCTTTGTCTCCGGTAGGTGATACGCTACTTTATAAGACTTTCAAAGTCTATACAGAATTCGATAAACCTCAAGCAGTAGATAACGATTTTGTTTCTAAAGCCGCTGGAGGAGAATATTTAAAAAACGTTAATTTTAAAGAAGGCTTATCATTTAGCGACAAAGATGGAGCTTCTGTTTTTATTGGTGTTCCTAAAAATACTACAGCAACAGCTACTTATACCGCATCAATAAAATTAACCGGGCAATTCGCTTTAGAAACTCCTGATAATAAACCATTTATCATATTTGACCCAAACGAGTCATTTAGCCCTGATGTATATCGCTTAACTGTTATGGGTGATATGCTTTCTCGTCAAATTTATGATGAATCTGGAAGAGTTTTTTCTCCTGGGAATACTCCGTCAAAAGCGCAAGTTGGTTTAGATTTAGTCGATAACGCTAAGCAAGTTCAACTTGAAAAATCCGGTGTTCAAACAATGACCGGGGTTTTGGCTGCTCCAAACTTTATAAGTACCAATCCGGCAACGGCAGATAATCATGTAGCTCGTTTTGACCAGATTGTAATAAAAGACTCAATTCAAGATTTTGGATATTATAGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ed927a696d1ace10558dbfe51eb7b9c7c52db0160b35a0ba7371e7c3a486a29b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3895
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bacteriophages quickly and effectively reduce contamination of various foods with Salmonella Woolston,J., Parks,A.R., Hanna,L.F., Charbonneau,D. and Sulakvelidze,A. 2016-07-02 — GenBank