Protein

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Genbank accession
YP_007676066.1 [GenBank]
Protein name
tail fiber protein; Ig-domain containing
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,88
Protein sequence
MATQPTNAIIRIAESDVNLPSTGQFNKNEPSASIQTTGLDKNQVVTAEELNYIFDNFGEWLEYLVLEDSDTNTRIDSLEQIEVTGGNGLTGGGDLTTDRTLTLGTPTTLDGSTTNNVTTDSHTHSLNMASQAESQTGTDNTKLVTPLRVHEAVPHTFSPSSVGASTDTVVFPNGMIQKFEILTESVDNTDKVLWSTPFPNGVLSINITIWTEGGSIAGISGGGIVYSYDRFGMIFSAGENFGDGQKAFVTAIGY
Physico‐chemical
properties
protein length:254 AA
molecular weight: 27098,42290 Da
isoelectric point:4,22003
aromaticity:0,07480
hydropathy:-0,24134

Domains

Domains [InterPro]
DC_0413
STR
1–240
DC_0413
G3DSA:2.60.40.3940
RBD
164–254
G3DSA:2.60.40.3940
YP_007676066.1
1 254
Architecture
STR
RBD
STR 1-240 | RBD 241-254
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage PWH3a-P1
[NCBI] 		754058 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio natriegens
[NCBI] 		691 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007676066.1 [NCBI]
Genbank nucleotide accession
NC_020863.1 [NCBI]
CDS location
range 126442 -> 127206
strand +
CDS
ATGGCAACACAACCAACAAATGCTATCATTAGGATAGCAGAGAGTGATGTTAACTTACCTAGTACAGGACAGTTTAACAAAAATGAACCATCTGCATCTATACAAACAACGGGGTTAGATAAGAATCAAGTTGTAACCGCAGAAGAATTAAACTACATATTCGATAACTTCGGCGAATGGTTAGAATACCTTGTATTAGAGGACAGTGATACAAATACCCGTATAGATTCTTTAGAGCAAATAGAGGTGACAGGCGGTAATGGATTAACAGGTGGTGGGGATTTAACCACTGACAGAACATTAACGCTTGGAACACCAACAACACTTGATGGTTCAACAACCAACAATGTAACTACTGATTCTCATACACATAGTTTGAATATGGCAAGTCAAGCGGAATCTCAGACAGGTACTGACAATACTAAACTTGTTACACCTCTTAGGGTTCATGAAGCAGTACCTCACACATTTTCACCATCGTCAGTTGGCGCAAGTACCGATACAGTAGTATTCCCTAATGGTATGATTCAAAAGTTTGAAATATTAACAGAATCTGTTGATAATACAGATAAGGTATTATGGTCAACACCTTTTCCTAATGGAGTATTATCTATAAATATAACTATCTGGACAGAGGGTGGATCTATAGCAGGGATAAGTGGTGGTGGTATTGTATATTCATATGACCGATTTGGTATGATTTTCTCTGCGGGAGAGAACTTCGGGGATGGTCAGAAAGCTTTTGTCACAGCAATAGGTTACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
225d7b78cd95eb7bf95a1d804e32fe6d0626c034e06ecd3bd7016be85cde7333
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7240
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Vibrio phage PWH3a-P1 Henn,M.R., Suttle,C., Winget,D., Chan,A., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank