Protein

View in Explore
Genbank accession
YP_007677204.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,64
Protein sequence
MATNTGALANLKPASATATTLFKNDVKSSTTGTVIMNCDGTGSDTYNIFLRRFDQELTVDANTYKLHRGDVISNLKWTLSASIPLEDAIPGTKFTSTDGEKCAYLLDVVEPTTTEYDVKFKSLIAFTLENVSDGSSSTDPDYANGETVSNGSGVSGVVYENVPGTNNDAVLWLGDITGGTFAEGDVLTGGSSTTAGTISVGGIATAAGRFVFNDGAGGSVFRLQNEIQPELLTDRVYKFDVSDSSMTGKVLQFSDTNGGTNNSGTEFTTGKTTSGTAGSSGAFVQYNLAGAELISTFYPYDQADATYTDDSSYFVFSDTYTFNEIFVYTQIDEGLQTPDQWVITDSFTYRDVTYAVDAVAGDSYGTILNWDKANSKVQVTIGPGATPWIGTDTFLDCPRQTSTTKATVTVNSVSNASTADVIVNADAIAQSTSEERKGLIIGPGQSIVVESANGRIVFVLDAFQDTVNEVTSSLYQRSSDYQTGVSGGGEGEGGGE
Physico‐chemical
properties
protein length:496 AA
molecular weight: 52291,33010 Da
isoelectric point:4,12511
aromaticity:0,09476
hydropathy:-0,21250

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-SSM4
[NCBI] 		536466 Uroviricota > Caudoviricetes > Pantevenvirales > Greenvirus > Greenvirus ssm4
Host Synechococcus sp. WH 8018
[NCBI] 		166322 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007677204.1 [NCBI]
Genbank nucleotide accession
NC_020875.1 [NCBI]
CDS location
range 9769 -> 11259
strand +
CDS
ATGGCAACTAACACAGGCGCACTCGCCAACTTAAAACCAGCATCTGCGACTGCGACGACACTTTTTAAGAACGACGTAAAGAGTAGCACGACTGGTACAGTCATCATGAATTGTGATGGCACAGGTTCTGATACCTATAATATTTTCCTCAGACGATTTGATCAAGAATTGACTGTAGACGCAAACACATATAAACTTCATCGTGGCGATGTTATATCAAATCTAAAATGGACTCTCTCTGCTAGTATCCCCTTAGAGGATGCAATTCCTGGTACTAAATTTACTAGCACAGATGGTGAAAAGTGTGCTTATCTGTTGGATGTTGTTGAACCTACGACTACAGAGTATGATGTAAAATTCAAATCTCTGATTGCATTTACATTAGAGAACGTATCTGACGGTTCTTCATCTACTGACCCTGACTATGCAAACGGTGAGACAGTTTCTAACGGTTCAGGTGTATCAGGTGTTGTATATGAAAACGTACCTGGCACTAACAATGATGCTGTACTTTGGTTAGGTGATATTACAGGTGGTACTTTCGCTGAAGGTGACGTACTTACTGGTGGATCTTCAACTACTGCTGGTACTATTTCTGTTGGTGGTATTGCAACTGCTGCAGGTAGATTTGTATTCAACGATGGTGCTGGTGGATCTGTATTCAGACTTCAGAATGAAATTCAACCAGAACTTCTTACTGATAGAGTATATAAGTTTGATGTATCTGACAGTAGTATGACTGGTAAGGTACTTCAGTTCTCTGATACTAACGGTGGTACTAATAACAGTGGTACTGAATTTACTACTGGTAAAACCACTTCTGGAACTGCTGGTAGTTCAGGTGCATTTGTACAATATAATTTGGCAGGTGCAGAATTAATCAGTACATTCTATCCTTACGATCAGGCAGATGCAACTTATACGGATGATAGTTCGTATTTTGTTTTCTCTGACACATATACTTTCAATGAGATTTTTGTATATACTCAAATAGATGAAGGATTACAGACCCCTGATCAGTGGGTTATTACTGACTCATTTACCTATCGCGATGTTACCTACGCTGTGGATGCTGTTGCAGGCGATTCGTACGGTACAATCCTGAATTGGGATAAAGCAAACAGTAAGGTACAAGTGACAATTGGACCTGGTGCTACACCATGGATAGGTACTGATACCTTCTTAGATTGTCCTAGACAAACATCTACAACTAAAGCAACTGTTACTGTTAACAGTGTAAGTAATGCTTCTACTGCTGATGTAATTGTTAATGCTGATGCTATTGCTCAGTCTACATCTGAAGAGCGTAAAGGTTTGATTATCGGACCTGGTCAGTCTATCGTTGTAGAATCTGCAAATGGTCGTATAGTATTTGTACTGGATGCATTCCAAGATACTGTAAATGAAGTAACTAGTTCTCTCTACCAGAGATCCTCTGATTATCAGACTGGTGTGTCTGGTGGTGGAGAAGGAGAAGGTGGTGGAGAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
9d97c8383e9fadb355094aec6dd51c1f31817b3a21ac31bb4a45d27c8a5ff786
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3619
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage S-SSM4 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Erlich,R., Young,S.K., Koehrsen,M., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C., Galagan,J. and Birren,B. 2011-09-23 — GenBank