Protein

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Genbank accession
QBX31885.1 [GenBank]
Protein name
capsid and scaffold protein
RBP type
TSP
Evidence DepoScope
Probability 0,99
Protein sequence
MSRFSYKGVDLSPFLTILRIERTVGNERQIQTNNAPKIGVNLQDVMFGAKIIKVKVSLATRAITPEFVDTVAYPTIATENINKLREQVSGLLHTDSEQRLELPDEPDRYYMAIPKGDINLEGIADWYDETTIEFFVPDGVAHSTTYRKFDNGAVSSDKVTFDIVNNGNVPAFPIVTVKHHAENGYIGVVNTSGALEIGDREEADKEVVRQSELLFDYRDSKITTGLSAATPNIAILNDTSQNLRGAVRSVDWQGRKHLFLQSPGGTAGNNAGSLTWDIPADSSGATGSLNDYIWWRQVFWLGAANQYGFIKLTVSDEQGRFLYGVETYKRAYGLGCEYNFFVANGKGGFHTIKQWTFLGTHENHHNPFNEPRGWSDIKRNDDTITVYWWGSYNTFTIPEIKGRKSAKVHVAFGAIGNKPLVTRMYLDGLMYRKDFVAVTKDIPNRYPIGSSVVLNSENDTVTVDGLERIVDIVHGSTFLTIPPGKSTLEVFSSSWVRTKPTVKIEFEERYL
Physico‐chemical
properties
protein length:511 AA
molecular weight: 57209,60460 Da
isoelectric point:5,93873
aromaticity:0,10959
hydropathy:-0,33855

Domains

Domains [InterPro]
G3DSA:2.40.30.200
ATT
1–142
G3DSA:2.40.30.200 IPR054738
DC_0420
STR
1–511
DC_0420
IPR006520
Unmapped
4–142
IPR006520
IPR008841
STR
30–136
IPR008841
QBX31885.1
1 511
Architecture
ATT
STR
ATT 1-142 | STR 143-511
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QBX31885.1
1 511
Domain Start End Length (AA) Confidence
N-terminal 1 209 209 0,9397
Central domain 210 416 208 0,1873
C-terminal 417 511 94 0,5026
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-209
Central
210-416
C-terminal
417-511

Taxonomy

  Name Taxonomy ID Lineage
Phage Streptococcus phage Javan84
[NCBI] 		2548309 No lineage information
Host Streptococcus azizii
[NCBI] 		1579424 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QBX31885.1 [NCBI]
Genbank nucleotide accession
MK449008 [NCBI]
CDS location
range 34851 -> 36386
strand +
CDS
TTGTCTAGGTTTTCATACAAGGGCGTTGATTTATCGCCCTTTTTAACTATTTTAAGGATTGAGCGGACTGTCGGTAATGAAAGGCAGATACAGACCAACAATGCTCCCAAAATCGGCGTCAATCTCCAAGATGTCATGTTCGGAGCTAAGATCATTAAGGTTAAGGTCAGTCTGGCAACAAGGGCAATAACTCCAGAATTTGTTGATACGGTAGCTTACCCTACTATCGCTACTGAAAACATCAACAAGTTGCGGGAGCAAGTGTCAGGACTGTTGCATACGGACAGCGAGCAGAGATTAGAGCTTCCAGATGAACCTGATAGGTACTATATGGCTATCCCGAAAGGTGATATAAACCTAGAGGGAATTGCGGACTGGTACGATGAAACGACCATTGAGTTTTTTGTACCTGACGGGGTTGCGCACAGCACCACCTACCGCAAGTTCGACAACGGTGCGGTGTCGTCTGATAAGGTTACTTTTGATATAGTCAATAATGGCAACGTGCCGGCTTTTCCTATCGTTACAGTTAAGCATCATGCAGAAAATGGTTACATTGGCGTGGTGAATACGAGTGGAGCTTTGGAAATCGGAGATCGTGAAGAAGCTGATAAAGAAGTTGTCAGACAGTCAGAGTTACTCTTTGATTATCGAGATAGTAAAATTACAACTGGCTTAAGTGCGGCAACGCCGAACATTGCTATCCTAAACGATACATCACAGAATCTTAGGGGTGCTGTGAGAAGCGTAGACTGGCAAGGCCGCAAGCATTTGTTCCTACAAAGTCCCGGAGGAACTGCTGGAAACAATGCAGGGAGTTTGACGTGGGATATACCAGCTGACAGCTCAGGAGCTACTGGCTCTCTGAATGATTACATCTGGTGGAGGCAAGTCTTTTGGCTTGGTGCCGCTAACCAATACGGTTTTATTAAGTTAACCGTCTCTGATGAACAGGGACGGTTTTTGTACGGTGTAGAAACCTATAAAAGAGCCTATGGACTGGGCTGTGAGTATAATTTCTTTGTCGCTAATGGTAAGGGTGGATTTCATACTATCAAGCAGTGGACTTTTTTAGGAACACATGAAAATCATCATAACCCATTCAATGAACCGAGAGGCTGGTCAGATATAAAGCGGAATGATGATACAATAACCGTTTATTGGTGGGGTTCTTATAATACCTTCACTATTCCTGAAATCAAGGGTAGGAAGTCGGCTAAAGTCCATGTGGCATTTGGCGCTATAGGAAACAAGCCTTTGGTTACTCGTATGTATCTTGATGGTCTGATGTATCGTAAGGACTTTGTGGCTGTTACCAAAGATATTCCTAATCGTTATCCAATCGGGTCTAGCGTGGTGTTAAATAGCGAAAATGACACGGTGACTGTGGACGGTTTGGAGCGGATTGTAGATATTGTCCACGGCTCTACATTTCTTACTATCCCACCCGGGAAATCCACTCTTGAAGTATTTTCTTCTAGCTGGGTCAGGACAAAACCGACCGTCAAGATAGAATTTGAAGAGAGGTACTTATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
1a137dcef6095bf28d3d4d7d045bee6c7b770233d61ef8f372f67be7c62db0b9
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8828
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Prophages and satellite prophages are widespread among Streptococcus species and may play a role in pneumococcal pathogenesis Rezaei Javan,R., Ramos-Sevillano,E., Akter,A., Brown,J. and Brueggemann,A.B. 2018-12-20 — GenBank