Protein

View in Explore
Genbank accession
WNM54388.1 [GenBank]
Protein name
pre-neck appendage protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,61
TSP
Evidence RBPdetect2
Probability 0,92
Protein sequence
MLNNCTSLYPQYNGSYENTTPRAMVICAYRNVVVNNFTAIGDGNFMANMPVIAVQFRAENVMLNNINVSGFKNSLADVKVFGGANRPKKVSLSNINIVNSSNNRGIAGGGKIYDLRIINANLQGNGTGNGVELYNNTAEIVGVSAENYKRPAMIAGKEYFYMPTSLKGGFSGGSTGGAAIAERSAVIASTDGSFAHSNRSFVIGSGAGSIANGSRSGVISSLSSVIEPGGHTRMIINSKNMKNSENYHIKAGYGADGPPSESNTKLDISTFTGTIKTAGQVQSGQNFGDYAEYFESQSGMAIPTGNIVTLDGRFIRKAQVNDIPIGVISETAGVILGDQMFHHKDKYLKNEFGGVITENVKKEWQDDAGNWYSDTVEMPVKNPDFDERDEEEYLSRAERPEWNVVGLIGQVYIRIDGTVKENDYIKPVNGVGTKDNINGYYRVEQITTHMITIKVMVWQLHLSTLLHQA
Physico‐chemical
properties
protein length:469 AA
molecular weight: 50873,44340 Da
isoelectric point:6,27675
aromaticity:0,08529
hydropathy:-0,31770

Domains

Domains [InterPro]
IPR012334
STR
1–164
IPR012334 G3DSA:2.160.10.20 G3DSA:2.40.300.10
DC_0616
STR
1–233
DC_0616 IPR021865
G3DSA:4.10.80.40
RBD
342–391
G3DSA:4.10.80.40
WNM54388.1
1 469
Architecture
STR
RBD
STR 1-233 | RBD 234-449 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WNM54388.1
1 469
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0233
Central domain 11 242 233 0,9752
C-terminal 243 469 226 0,9133
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-242
C-terminal
243-469

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage S-CoN_Ph17
[NCBI] 		3076573 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Staphylococcus sp.
[NCBI] 		29387 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WNM54388.1 [NCBI]
Genbank nucleotide accession
OR354840 [NCBI]
CDS location
range 53986 -> 55395
strand -
CDS
ATGTTGAATAACTGTACTTCATTATATCCACAATATAATGGTTCATATGAGAACACAACACCAAGAGCAATGGTTATTTGTGCTTACAGAAATGTAGTCGTTAATAACTTTACAGCTATTGGCGATGGCAATTTTATGGCAAATATGCCAGTTATTGCTGTTCAATTCAGAGCTGAAAATGTTATGCTTAATAATATTAATGTAAGTGGTTTTAAAAATTCATTAGCTGATGTTAAAGTATTTGGTGGAGCAAATAGACCTAAAAAAGTATCATTATCTAATATCAACATTGTTAATTCATCTAACAATAGAGGTATTGCAGGCGGTGGAAAAATTTATGATTTAAGAATTATAAATGCTAACTTGCAAGGTAATGGTACAGGAAATGGTGTTGAATTATATAACAACACGGCTGAAATTGTTGGAGTAAGTGCAGAGAATTATAAAAGACCAGCTATGATTGCTGGAAAAGAGTATTTTTATATGCCCACAAGTCTTAAAGGAGGATTTAGTGGGGGGAGCACAGGTGGTGCAGCTATTGCTGAAAGAAGTGCTGTTATTGCCTCTACTGATGGTTCCTTTGCTCATAGTAACCGTTCTTTTGTTATAGGCTCTGGTGCTGGTAGTATTGCTAATGGTTCACGTTCTGGTGTTATTAGTTCATTGTCATCTGTTATTGAGCCAGGCGGACATACTAGAATGATTATTAATAGTAAAAACATGAAAAACAGTGAAAACTATCACATTAAAGCTGGTTATGGAGCTGACGGTCCACCAAGTGAATCAAATACTAAACTTGATATTAGTACATTTACTGGTACAATCAAGACAGCAGGACAAGTTCAATCTGGACAAAACTTTGGGGACTATGCCGAGTATTTTGAATCACAAAGTGGTATGGCAATTCCTACTGGTAATATAGTTACACTTGATGGCAGATTTATAAGAAAAGCACAAGTCAATGATATTCCAATCGGTGTTATATCTGAGACAGCAGGAGTTATTTTAGGGGACCAAATGTTCCATCACAAAGATAAATATCTTAAAAATGAGTTTGGCGGAGTTATTACTGAAAATGTCAAAAAAGAATGGCAAGATGATGCTGGTAATTGGTATTCAGATACAGTAGAAATGCCAGTTAAAAATCCAGATTTTGACGAACGAGACGAAGAAGAATATCTGTCTCGTGCTGAACGACCAGAATGGAACGTTGTAGGTCTTATAGGTCAAGTATATATTAGAATAGATGGTACTGTCAAAGAAAATGATTATATTAAGCCAGTAAACGGTGTCGGAACTAAAGATAATATTAATGGTTATTATAGAGTTGAACAAATTACTACCCATATGATAACGATAAAGGTTATGGTGTGGCAATTGCATTTATCCACCCTATTACACCAAGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
11006866a3159e555283e2410b48d15848ef6beda8e7b35821a50c18218b671c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7820
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50