Protein

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Genbank accession
AJF40900.1 [GenBank]
Protein name
minor tail protein
RBP type
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MTYTLKRECEILVVYKGVGYLFDALPSFDFSQTFSKTSNPRRTLHNNSAKPVTISGAKNTANFSMEVLITDSYIESVFFEIAGWNKLGNNVYEYPDSVPIIEPCTIYILNPNKNVAVRTAFIESIDLPMAKASPKSLSVSFTASSIDEGVKVEGVGMTHRQATPLPPSPIQISINSTLANHVTSASFNTKNSVSWRQDRGIHDVGKVYTPSRAVVSDMSMTGTINLYATKSLVIPSNKPIIVDLHTHHSGVTIKMDSVHLLKRLEPDDVFVEALDITLMEMSKNVIVDFGGITI
Physico‐chemical
properties
protein length:294 AA
molecular weight: 32332,65090 Da
isoelectric point:6,44568
aromaticity:0,07823
hydropathy:-0,01871

Domains

Domains [InterPro]
IPR056389
ATT
1–293
IPR056389
AJF40900.1
1 294
Architecture
ATT
ATT 1-293 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AJF40900.1
1 294
Domain Start End Length (AA) Confidence
N-terminal 1 227 227 0,2552
Central domain 228 283 57 0,0090
C-terminal 284 294 10 0,9109
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-227
Central
228-283
C-terminal
284-294

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage phi 3
[NCBI] 		1589298 Uroviricota > Caudoviricetes > Demerecviridae > Jesfedecavirus > Jesfedecavirus phi3
Host Vibrio cholerae
[NCBI] 		666 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AJF40900.1 [NCBI]
Genbank nucleotide accession
KP280063 [NCBI]
CDS location
range 95818 -> 96702
strand -
CDS
ATGACTTACACTCTAAAACGAGAGTGTGAGATTTTAGTTGTATATAAAGGTGTAGGGTATCTATTTGATGCCCTACCATCTTTTGACTTCTCTCAAACATTCTCGAAAACGTCCAACCCTAGAAGGACACTACATAATAATTCAGCCAAGCCTGTTACTATATCTGGTGCTAAGAATACGGCTAACTTTAGTATGGAAGTACTAATAACGGACTCATATATAGAGTCGGTCTTTTTCGAGATTGCTGGATGGAACAAGCTAGGTAACAATGTATATGAGTACCCTGACTCTGTGCCTATTATAGAGCCATGTACTATCTATATACTAAACCCTAACAAGAACGTAGCTGTACGCACAGCATTTATAGAGTCTATAGACTTACCTATGGCTAAGGCCTCGCCTAAATCACTATCAGTTAGCTTCACAGCATCTAGTATTGATGAGGGGGTAAAAGTAGAGGGCGTAGGCATGACACACAGGCAAGCCACTCCGCTACCTCCTAGCCCTATACAAATATCTATAAACTCTACATTAGCTAATCATGTAACCTCAGCGTCCTTTAACACCAAAAACTCAGTGAGTTGGAGGCAGGATAGGGGTATTCATGATGTTGGTAAAGTTTACACACCCTCTAGGGCGGTAGTATCCGACATGTCTATGACCGGTACTATCAACCTTTATGCAACTAAGTCACTAGTAATACCTAGTAATAAACCTATAATAGTTGACTTGCATACACACCATAGCGGTGTTACAATTAAAATGGATTCAGTCCATTTATTAAAACGCCTAGAGCCTGACGATGTATTTGTTGAGGCACTGGATATAACTTTAATGGAAATGTCTAAAAACGTAATAGTAGATTTCGGAGGAATTACTATATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
65ad18eb36ac4a60ffe58a7ad77637b9e952475ed2b79fbd3d0d18a86a98f197
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8146
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequences of three Vibrio cholerae specific bacteriophages Bhandare,S.G., Warry,A., Emes,R.D., Hooton,S.P.T., Barrow,P.A. and Atterbury,R.J. 2017-11-16 — GenBank