Protein

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Genbank accession
AMO43454.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence RBPdetect
Probability 0,80
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MADRFPLIVNASSRKIEELVAGDNLDLTGNGVIIAGDIGDGKYLKSDGGFVVWDNPGDVYLTQTQTLTNKTLESSILSGSLNTFSNIPNSALVNTGITINNQTVALGGTITTPDNNTSYTIGVTDGNIAAQKIVTLTGSDSLTDSFTIAVGSPASVPAGQNAVSLALERSGDTITLSGTVVDNNTITTLQADSNGTPQTGVMRISGSGGVTITQNTSTKTIDVFSRNDDTVTRLRGGVGQVYASGDFTILGGTEVTISQSPNGVTGDPEITINSSDTVTRVKGGGLGTLASGDLTITGGAGGNVTVSQSGSTINIDSENDNTITELGANNNSLASGKFKLQQAGATTLTQSYDAGSGVTTISISSTNDDTGAALSAGDGLSLSNNSFSLKNSGNLIDNRVSKWDDANGQFTNGIITDDGSTITINGDLNVLGINTILETSTLVVEDNTIELRKGSSLTGSDGGIQVNRTTQSDGIVTTFNILQWYEAGAYWRSYDGSVAKRFVTETDTQTLTNKTLTSPSMTNPELGSATATTYNGLNIATTSASTFEIVNLKTFKVDNTLTLKGSDGITIDFEGGGGINAKVAYNTYHLGQFSTTTSSQLSGKISDSTGAGSLVFAQNPVFSNSINSQDSTFSIIDSSVGTVNFAGAATDITIGSTSGTTTIAHGLTVDGNVILTDQVGRTLLVNGVANFDLADIQIRGTNATPIYIGRGGGEVATNTRLGYSALQSNQSGFENTAMGHSTLVSCVDGSENTAFGYNTLRDLTDGSMNVAIGSLAQAELESGDGNVVIGQGAGQNNVSGDYNLCLGHYAGHSVSGSGNVLIGPASTEDTLSPTFAPPSAGGNNQLVIGSGSGVWIRGDSSYNVRLENDLRVEGELRINGNLVVEGSTVSITSSTITIDDKNIELASVTNTTFSSSVTNGSADLTNVAVLGLADSANPTAGLIIGMTVSSPGGAIPAGTVINALNPAAQTITLSNAVTTSSATEQFVAQGPTDSAADGGGMIIKGTPVLNGGTGDKTFLYDHSRVEKYFVSTESIELANNKKFSIANQLVLDQTTLGSTVVNSSLTSVGILSGPTGLPALETDGAVVFGGRIIEEAFSNMSQEFSISAGVASIITAAANTICGKTTATNSAIQTWGFSTADPDGNTLQNGQTMTVTLIIDASPASTYGDVCTVDGASITNGVRWSGGSPPISTSNTDILTFLIVKDSSGNLRVYGQGNTDFS
Physico‐chemical
properties
protein length:1222 AA
molecular weight: 124776,29320 Da
isoelectric point:4,23231
aromaticity:0,05074
hydropathy:-0,06211

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AMO43454.1
1 1222
Domain Start End Length (AA) Confidence
N-terminal 1 721 721 0,5859
Central domain 722 934 214 0,6454
C-terminal 935 1222 287 0,7551
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-721
Central
722-934
C-terminal
935-1222

Taxonomy

  Name Taxonomy ID Lineage
Phage Cyanophage S-RIM44
[NCBI] 		1278485 Uroviricota > Caudoviricetes > Pantevenvirales > Vellamovirus > Vellamovirus rhodeisland44
Host Synechococcus
[NCBI] 		1129 cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae
Host Synechococcus sp.
[NCBI] 		1131 cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AMO43454.1 [NCBI]
Genbank nucleotide accession
KU594607 [NCBI]
CDS location
range 179517 -> 183185
strand -
CDS
ATGGCAGATCGTTTTCCACTTATTGTTAATGCTAGTTCTAGAAAGATCGAAGAACTTGTAGCAGGTGACAATTTAGATCTCACTGGTAATGGAGTAATCATTGCTGGTGATATAGGTGACGGAAAATATTTAAAGAGTGATGGGGGATTTGTCGTATGGGATAATCCTGGTGATGTTTATCTGACTCAGACTCAGACATTAACTAACAAAACTCTTGAGTCATCCATCCTCTCAGGATCTCTCAATACATTCTCAAACATTCCAAACAGTGCTCTAGTTAACACTGGTATCACGATCAACAACCAGACTGTTGCTCTTGGTGGAACGATCACAACTCCAGATAACAACACATCATATACTATTGGTGTTACTGATGGAAACATTGCTGCTCAAAAAATTGTAACTCTCACTGGTTCTGATTCTCTTACTGATAGCTTCACGATTGCTGTAGGTTCTCCTGCTAGTGTTCCTGCTGGACAGAATGCAGTAAGTTTGGCACTGGAAAGGAGTGGAGACACTATCACCCTTTCAGGAACTGTTGTAGATAACAACACTATCACCACACTGCAAGCAGATAGCAATGGAACTCCTCAAACAGGAGTAATGAGAATCAGTGGTAGTGGTGGAGTTACTATCACACAAAACACTAGCACAAAAACTATCGATGTCTTCAGTAGAAATGACGACACCGTTACAAGACTAAGAGGTGGTGTTGGTCAGGTCTATGCTTCTGGAGACTTCACAATTCTAGGTGGAACTGAAGTCACGATTTCACAATCTCCTAATGGAGTTACTGGAGATCCTGAGATCACAATCAACTCTAGCGATACTGTTACTAGAGTAAAAGGTGGTGGTTTAGGAACTCTTGCATCTGGAGATCTAACAATTACAGGTGGAGCAGGTGGAAATGTAACTGTCTCACAATCTGGTAGCACAATTAACATTGACTCTGAAAATGATAACACCATTACAGAACTAGGTGCTAACAATAATTCACTTGCTTCTGGCAAATTTAAACTACAGCAAGCAGGAGCAACAACACTTACTCAATCATATGATGCTGGATCTGGAGTAACAACTATTTCAATCAGTTCTACAAACGATGACACTGGTGCTGCACTGTCTGCTGGCGATGGATTGTCTCTTTCTAATAATTCCTTCTCTCTAAAGAACTCTGGTAACCTCATCGATAACAGAGTCTCCAAGTGGGATGATGCTAATGGTCAGTTTACAAACGGCATCATCACTGACGATGGTTCTACTATCACAATCAATGGTGACTTGAATGTTCTTGGAATTAATACAATCCTAGAAACATCAACACTAGTTGTTGAAGATAATACTATTGAACTAAGAAAAGGTTCCTCACTAACTGGTTCTGATGGTGGCATTCAAGTCAATAGAACAACTCAATCTGATGGTATTGTAACTACATTCAATATACTACAGTGGTATGAAGCTGGTGCATACTGGAGATCATATGATGGTTCAGTTGCGAAAAGATTTGTAACTGAGACTGATACACAAACTCTTACCAATAAGACACTAACCTCTCCATCAATGACCAACCCCGAACTGGGGTCAGCAACAGCAACAACATACAATGGTCTGAACATTGCAACTACATCTGCATCTACATTTGAAATAGTAAACCTCAAGACATTTAAAGTTGATAACACTCTGACACTGAAGGGTTCTGATGGTATCACTATTGACTTTGAAGGTGGTGGTGGCATCAATGCAAAAGTTGCATACAACACCTACCACCTAGGACAATTCTCTACAACAACTTCCAGTCAGTTGTCAGGTAAAATTTCTGACAGCACTGGTGCTGGTTCTCTGGTATTTGCACAGAACCCTGTATTCTCTAATAGCATTAACTCTCAGGACTCTACATTTAGTATTATAGATTCTTCTGTTGGCACTGTTAACTTTGCTGGTGCTGCAACTGATATTACCATTGGTTCAACATCAGGAACTACAACTATTGCACATGGTCTAACAGTTGATGGCAACGTAATTCTAACTGATCAAGTTGGAAGAACCCTGCTAGTCAACGGTGTTGCCAACTTTGATCTTGCTGACATCCAGATTCGTGGAACAAATGCAACACCTATCTACATTGGTCGTGGTGGTGGTGAAGTTGCAACCAACACCAGACTTGGATATTCTGCTCTACAATCTAACCAATCTGGTTTCGAGAACACTGCCATGGGTCACTCTACCCTGGTAAGTTGTGTTGATGGCAGCGAAAACACTGCTTTTGGTTATAATACACTGAGAGATCTGACAGACGGTAGCATGAACGTGGCTATCGGTTCTCTAGCACAAGCAGAGTTAGAGTCTGGTGATGGTAACGTTGTAATCGGACAAGGTGCTGGTCAAAATAATGTTTCTGGAGACTACAACCTATGCTTGGGTCACTATGCAGGACATTCTGTAAGTGGTAGCGGCAATGTTCTAATCGGTCCAGCATCAACAGAAGATACACTAAGTCCAACTTTTGCTCCTCCATCAGCAGGTGGCAACAACCAGTTAGTTATTGGTTCAGGTTCTGGTGTATGGATTAGAGGTGATTCTTCATACAATGTCAGACTAGAAAATGATCTGAGAGTTGAAGGAGAATTAAGAATCAATGGTAACTTGGTAGTCGAAGGTTCAACTGTATCCATCACATCATCTACCATCACAATTGATGATAAAAACATTGAACTTGCTTCTGTCACAAACACAACCTTTAGTTCAAGTGTCACTAATGGTTCTGCAGACTTAACAAACGTTGCAGTTCTAGGTCTTGCAGACAGTGCAAACCCAACCGCAGGTTTGATTATTGGCATGACAGTCAGTTCTCCTGGCGGTGCTATTCCTGCAGGAACTGTTATTAATGCTCTAAATCCTGCAGCACAGACCATCACACTAAGTAATGCTGTTACAACCAGTAGTGCAACAGAACAGTTTGTTGCACAAGGTCCTACCGATAGTGCTGCTGACGGCGGTGGCATGATTATCAAGGGAACTCCAGTATTGAATGGAGGAACAGGAGACAAAACATTCCTATATGATCATAGCAGAGTTGAAAAATATTTTGTATCCACTGAAAGTATTGAACTTGCTAACAATAAAAAATTCTCTATTGCGAACCAACTAGTTCTTGATCAAACCACTCTTGGTTCTACTGTTGTCAATTCTTCTTTGACATCTGTTGGTATTCTTAGTGGTCCTACTGGACTACCAGCTCTCGAAACTGATGGTGCTGTTGTCTTTGGTGGACGTATTATTGAAGAAGCATTCAGTAACATGTCGCAGGAGTTCTCAATCAGTGCTGGAGTTGCTAGCATTATCACTGCTGCTGCTAACACTATCTGTGGTAAGACCACTGCAACAAACTCTGCAATTCAAACTTGGGGATTCAGCACTGCTGACCCAGATGGAAACACACTACAGAACGGTCAAACTATGACTGTAACTTTGATCATTGATGCTTCTCCTGCGTCTACATATGGTGATGTTTGCACTGTTGATGGAGCGTCTATAACAAATGGTGTTAGATGGTCTGGTGGTTCTCCTCCAATCTCAACATCCAACACAGACATTCTTACTTTCCTAATCGTGAAGGATAGTAGTGGTAACCTTAGAGTATACGGTCAAGGAAACACAGACTTCAGTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
27e3c1b44a8994131fe8a6401ecdd6e195be6bdabb205b9f962ca9aa030335b9
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2882
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The genomic content and context of auxiliary metabolic genes in marine cyanophages Marston,M.F., Martiny,J.B.H. and Crummett,L.T. 2016-12 — GenBank