Protein

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Genbank accession
YP_009004263.1 [GenBank]
Protein name
phosphodiesterase
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAKATRKGYASGVSSGASTTFTITPPSDLVDGDWMLFSIAVNGTTNTITPPSGWVTLGDSNQGSNTSGTRRFYLFGKRRIGSEATYQFTTSSAVVVAWSIVYGSGGVVSPAEWVNGGMERRAVYAGDGYKTRAPGVTAATNSLVLTYAGEASTATETDTQVTVAGATKWFFVGHQTNSIETALWAYNDSVTAGKTADVIVAYPNLQASNAVGVQVAIPELVESGGTPTVLAVADFETVNPFTIGSTANFEVSTAVSRSGTKGLRRASNASTATHSQVVSSQVFTPSGLGYRLVGYVRLDDSSANVNLAGLTVGAAADGTGGIQAIVDTRNGAGGASVSSLQLRTGLSTVITGLSVPGSILAGSRYRIEMDWFAGSPSVKARFYNDSTGAYIGSLEGGSTTTSGAVGVYSYGLASFDDITLQTIVTPALGVRLAFTPDGTTRVTGRLTYFDGAKNIPILSARAIPYGKKLDRLFERPFVMAHRGGSLDYAEMSMRGYTESVALGAMGLEFSVARSSDGVFFGLHDADLNRTSPSLGSTSFKPGEHTWAEISALSVVVGTGDGRFGPQPYMKLEDMLNTYARSHTIFIDPKVVGNSNIPDLIAYLQTFPDYQNTFVGKYFHSGFVEVGRKFRAAGMKTWGYYYYDDLVTSLTAAGGTPKATNIQTTNTEWDYLGLEYTASQDAWNEVLSYGKPVIGHIVPTGAAALTALSKGASGVMASGIRSVMAARAW
Physico‐chemical
properties
protein length:728 AA
molecular weight: 76498,60520 Da
isoelectric point:6,48223
aromaticity:0,10027
hydropathy:-0,01717

Domains

Domains [InterPro]
DC_2285
STR
1–475
DC_2285 IPR017946
IPR017946
STR
463–635
IPR017946
PTHR46211
Unmapped
472–592
PTHR46211
IPR030395
ENZ
476–728
IPR030395
IPR030395
ENZ
481–593
IPR030395
YP_009004263.1
1 728
Architecture
STR
ENZ
STR 1-716 | ENZ 717-728
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009004263.1
1 728
Domain Start End Length (AA) Confidence
N-terminal 1 382 382 0,0243
Central domain 383 717 336 0,8286
C-terminal 718 728 10 0,4943
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-382
Central
383-717
C-terminal
718-728

Taxonomy

  Name Taxonomy ID Lineage
Phage Clavibacter phage CN1A
[NCBI] 		1406793 Uroviricota > Caudoviricetes > Cinunavirus >
Host Clavibacter michiganensis
[NCBI] 		28447 cellular organisms > Bacteria > Bacillati > Actinomycetota > Actinomycetes > Micrococcales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009004263.1 [NCBI]
Genbank nucleotide accession
NC_023549 [NCBI]
CDS location
range 38151 -> 40337
strand -
CDS
ATGGCTAAGGCAACACGCAAGGGTTATGCCTCTGGTGTGTCCTCGGGCGCTTCCACGACGTTTACGATCACGCCTCCCAGCGACCTGGTGGATGGCGATTGGATGCTTTTCTCGATCGCGGTCAACGGCACGACCAATACGATCACGCCGCCCTCTGGTTGGGTGACGCTTGGCGACTCTAACCAGGGCAGCAACACCTCGGGCACGCGCCGTTTCTATCTCTTCGGCAAGCGTCGGATCGGTAGTGAGGCCACTTACCAGTTCACTACGTCTAGTGCCGTAGTTGTGGCATGGTCCATCGTGTATGGTTCCGGTGGCGTCGTCTCGCCCGCTGAGTGGGTCAACGGTGGCATGGAGCGCCGTGCTGTTTACGCGGGAGATGGTTACAAGACCCGGGCTCCGGGCGTTACGGCCGCCACCAACAGTCTTGTGTTGACGTATGCGGGTGAAGCCAGCACCGCCACGGAAACGGATACACAGGTCACTGTGGCGGGTGCCACTAAGTGGTTCTTCGTGGGGCACCAAACCAACTCCATTGAGACGGCTTTGTGGGCGTACAACGACTCGGTGACGGCGGGCAAGACGGCCGACGTGATTGTGGCGTATCCGAACCTCCAGGCTTCCAATGCCGTGGGCGTTCAGGTTGCCATTCCTGAACTGGTCGAGTCCGGCGGCACACCTACGGTGCTGGCAGTGGCTGACTTTGAGACCGTCAATCCTTTCACTATCGGCAGTACCGCAAACTTCGAAGTCAGTACCGCGGTTTCTCGTTCGGGCACCAAGGGGTTGCGTCGCGCTTCTAACGCCTCTACGGCCACTCATTCGCAGGTGGTATCCTCGCAGGTTTTCACGCCCTCGGGGCTGGGGTACCGCCTTGTCGGCTACGTCCGGCTCGACGACTCGTCCGCGAATGTCAACCTGGCCGGACTTACGGTTGGAGCTGCTGCGGATGGTACGGGTGGCATCCAGGCCATCGTGGATACGCGAAACGGGGCGGGCGGGGCCAGTGTTTCTAGCCTCCAGCTTCGTACTGGGCTCAGCACGGTGATCACCGGGCTGAGTGTTCCCGGCTCGATTCTTGCCGGTAGTCGCTATCGCATCGAAATGGATTGGTTCGCCGGGTCCCCCAGTGTGAAGGCGCGCTTCTACAACGACAGCACCGGTGCATACATCGGCTCGCTGGAGGGTGGTAGTACCACCACGTCCGGCGCGGTGGGTGTCTACAGCTATGGCCTCGCATCCTTTGACGACATCACGCTCCAGACCATCGTCACCCCGGCGCTCGGCGTGCGGCTGGCTTTCACTCCTGACGGCACCACGCGCGTCACGGGGCGGCTGACCTACTTCGACGGCGCGAAGAACATCCCGATCCTCTCTGCCCGTGCGATCCCGTACGGCAAGAAGCTGGATCGGCTGTTCGAGAGGCCGTTCGTCATGGCGCATCGCGGCGGGTCTCTGGACTACGCCGAGATGAGTATGCGCGGCTACACGGAGTCCGTGGCGCTCGGTGCTATGGGCTTGGAGTTCTCGGTTGCGCGTTCCTCGGATGGCGTGTTCTTCGGCCTCCACGACGCCGACCTGAACCGCACGAGTCCGAGCCTCGGTAGCACTAGCTTCAAGCCGGGCGAGCACACGTGGGCGGAGATCAGCGCGCTCAGCGTGGTCGTCGGCACGGGTGACGGGCGCTTCGGCCCCCAGCCGTACATGAAGCTGGAGGACATGCTCAACACGTATGCCCGCAGCCACACCATCTTCATCGACCCGAAGGTCGTCGGCAACTCGAACATCCCGGACCTGATCGCCTACCTCCAGACGTTCCCGGACTACCAGAACACGTTCGTGGGTAAGTATTTCCACTCGGGCTTCGTCGAGGTGGGGCGCAAGTTCCGTGCGGCTGGCATGAAGACGTGGGGTTACTACTACTACGACGACCTGGTGACCTCGCTCACTGCGGCTGGTGGTACACCCAAGGCGACCAACATCCAGACCACCAACACTGAGTGGGACTACCTGGGCTTGGAGTACACCGCCAGCCAGGACGCTTGGAACGAGGTGCTGTCGTACGGCAAGCCGGTCATTGGGCACATCGTTCCGACCGGTGCCGCCGCACTCACGGCTCTGAGCAAGGGTGCGTCTGGAGTCATGGCCTCGGGTATCCGCAGCGTCATGGCTGCGCGAGCCTGGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
a64784920998f38ed3d6bce4ab1b93b0393a9d06516e72454d7bd72d77602c43
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7794
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50