Protein

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Genbank accession
YP_010667754.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,79
Protein sequence
MANVRPIVRKNGVMTQMRGADVIDPSLLPYGAPIGYNVLINGGWKFWQRGTSKTLNAPLAAYVADRWQGVCGGDAGASLALSRQKFAIPVDSATHYGRFATQNATANTDSFICQIIEGVGTFAGKTTTASFYGWANASNTPIGVRIIQRFGSGGSPEVETEIGLLNLNITPGYVSITFDVPSIAGKTIGSNDMLFLIFDFCKSSGYGDQLKQKNPVVAMTMNKWELGTTRTTFADLDDAAEFRKCQRYYEKSYNTDTEPGTTTVPGAAGSGARTPYYLQAPCTQFTVSKRVPPSISIYSPQSGQNGNVAEYNTSGNFVANRIGIVLNIGQSNFEMILGNGDATVDNTIRWHWVADAELF
Physico‐chemical
properties
protein length:359 AA
molecular weight: 38751,14390 Da
isoelectric point:7,56666
aromaticity:0,10585
hydropathy:-0,17855

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010667754.1
1 359
Domain Start End Length (AA) Confidence
N-terminal 1 236 236 0,1358
Central domain 237 348 113 0,0004
C-terminal 349 359 10 0,9993
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-236
Central
237-348
C-terminal
349-359

Taxonomy

  Name Taxonomy ID Lineage
Phage Stenotrophomonas maltophilia phage vB_SmaM_Ps15
[NCBI] 		3071007 Uroviricota > Caudoviricetes > Menderavirus >
Host Stenotrophomonas maltophilia
[NCBI] 		40324 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Lysobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010667754.1 [NCBI]
Genbank nucleotide accession
NC_070951.1 [NCBI]
CDS location
range 159783 -> 160862
strand +
CDS
ATGGCTAACGTGCGTCCCATTGTCCGGAAGAATGGCGTGATGACGCAGATGAGAGGGGCGGATGTCATCGATCCGTCCCTCTTGCCTTATGGTGCGCCTATCGGGTACAATGTCCTAATCAATGGCGGATGGAAGTTCTGGCAGCGTGGAACCTCAAAAACTCTGAATGCTCCTCTTGCAGCTTATGTTGCAGACAGATGGCAAGGTGTATGCGGCGGTGATGCAGGTGCATCACTAGCACTGTCTCGTCAGAAATTCGCAATCCCTGTAGACTCCGCCACTCACTACGGTAGGTTCGCAACTCAAAATGCAACGGCGAACACTGATAGTTTCATCTGTCAGATTATCGAGGGTGTAGGCACATTTGCCGGAAAGACTACAACCGCCTCTTTCTATGGATGGGCGAATGCCAGCAACACACCAATCGGAGTGAGGATCATCCAGAGATTTGGATCTGGCGGCTCTCCAGAGGTTGAGACTGAGATCGGACTTCTCAATCTGAACATCACTCCAGGCTATGTATCTATCACATTTGACGTCCCCAGCATCGCCGGTAAGACGATCGGGTCAAATGATATGCTGTTCCTCATCTTTGACTTTTGCAAGTCCAGCGGATACGGCGATCAGTTGAAACAGAAGAACCCAGTTGTCGCAATGACGATGAACAAGTGGGAGCTGGGAACAACACGAACCACATTCGCTGATCTGGATGACGCAGCCGAATTCCGTAAGTGCCAGCGGTACTACGAGAAGAGCTACAATACAGATACAGAACCTGGAACGACAACTGTTCCAGGTGCGGCTGGATCGGGAGCGAGAACCCCGTACTATCTGCAAGCGCCGTGTACTCAGTTTACCGTCTCAAAGAGAGTTCCTCCTTCCATCTCCATCTATAGTCCGCAGTCTGGTCAGAACGGCAATGTCGCGGAGTACAACACTTCAGGAAACTTCGTTGCCAACAGAATCGGTATCGTCTTGAACATTGGACAATCCAACTTCGAGATGATTTTGGGCAACGGAGATGCCACAGTCGACAATACCATCCGGTGGCACTGGGTGGCAGATGCGGAGTTGTTCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
54e713f3d4c5930454fac6cdad55b4acf70549b876d04875cda779054828dfd3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8785
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of bacteriophage vB_SmaM_Ps15 infective to Stenotrophomonas maltophila clinical ocular isolates Damnjanovic,D., Vazquez-Campos,X., Elliott,L., Willcox,M. and Bridge,W.J. 2020-06-11 — GenBank