Protein

View in Explore
Genbank accession
QCG76015.1 [GenBank]
Protein name
baseplate hub subunit and tail lysozyme
RBP type
TSP
Evidence RBPdetect2
Probability 0,50
Protein sequence
MSTYSRTVGVNPSASKTPTGRAQKYYGMYIGFVKDNVDSNRMGRLRVWVPEFGTDPSDESGWLLVGYCSPFAGATNPMTIGGSQDVSAFHETQTSYGMWAVPPDLENQVAVMFANGDPAKGFWFGCIWQQQMNHMIPAVAGSVNNYETAGKSLPVGEYNKNTLEKVNAQTINKPVASLAQGLKTQGLINDNIRGVSSSSARREAPSQVFGILTPGPVIDGANARRHGGHQFVMDDAPTSEHITLRTRSGAQIRLDETNGIIYIINKLGTAWIELDNSGNVDVFGAKSGSLRFMEDFNIRADRDINIEAGRNINIKASKDYTTVSTGGIAPELTGQGGDIFIQANNNLNIQSQKDTLLNQLGGSLHNTAGVDISLKAGSNYNLQAAGQIATATNGTYGLSAGGDIIELGANIHMNGPQPPAPDSPTEASTPTTNGKTNILPEFSDANRYNRMSQPGVTTIVSRFNTFEPCPEHKNKGA
Physico‐chemical
properties
protein length:477 AA
molecular weight: 51082,29420 Da
isoelectric point:5,94049
aromaticity:0,07338
hydropathy:-0,41509

Domains

Domains [InterPro]
SSF69255
ATT
25–126
SSF69255 DC_1827 SSF69349 DC_1558
SSF69255
ATT
25–130
SSF69255 SSF69349
QCG76015.1
1 477
Architecture
ATT
STR
RBD
ATT 25-130 | STR 131-415 | RBD 416-477
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QCG76015.1
1 477
Domain Start End Length (AA) Confidence
N-terminal 1 256 256 0,1455
Central domain 257 455 200 0,3719
C-terminal 456 477 21 0,9971
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-256
Central
257-455
C-terminal
456-477

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_PaeM_PA5oct
[NCBI] 		2163605 Uroviricota > Caudoviricetes > Arenbergviridae > Wroclawvirus PA5oct >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QCG76015.1 [NCBI]
Genbank nucleotide accession
MK797984 [NCBI]
CDS location
range 66289 -> 67722
strand -
CDS
ATGAGTACATATTCTAGAACAGTAGGTGTAAATCCGTCTGCTAGCAAAACACCGACAGGCAGAGCACAAAAATATTACGGAATGTATATTGGGTTTGTCAAAGATAATGTCGATAGCAACAGAATGGGAAGACTTAGGGTTTGGGTACCGGAATTTGGTACTGATCCGAGCGATGAATCTGGTTGGTTGTTAGTTGGATACTGTTCGCCATTTGCTGGCGCAACTAATCCTATGACAATCGGCGGCTCACAAGATGTATCTGCATTCCACGAAACACAAACATCTTACGGTATGTGGGCAGTTCCGCCAGATCTTGAAAATCAGGTAGCTGTAATGTTTGCTAACGGCGACCCTGCAAAGGGATTTTGGTTTGGATGCATATGGCAACAACAGATGAATCATATGATTCCTGCAGTTGCTGGCAGTGTTAATAATTATGAGACAGCAGGCAAATCTCTACCTGTAGGCGAATATAATAAAAACACACTAGAAAAAGTAAATGCACAAACTATTAATAAACCTGTTGCTAGTCTTGCCCAAGGATTAAAAACGCAAGGGCTTATTAACGATAATATACGGGGTGTATCTTCATCATCTGCACGCAGGGAAGCACCTAGTCAGGTATTCGGTATTCTTACCCCAGGTCCAGTAATAGACGGTGCAAATGCAAGAAGGCATGGCGGTCATCAGTTCGTTATGGATGATGCACCCACATCCGAACATATCACATTAAGAACTAGATCTGGTGCTCAAATAAGATTAGATGAAACTAATGGAATAATTTATATAATTAATAAATTGGGCACTGCTTGGATAGAATTAGATAACTCGGGCAACGTAGATGTATTTGGTGCAAAATCCGGATCTTTACGTTTTATGGAAGATTTTAATATACGAGCAGATAGAGATATTAATATAGAGGCAGGAAGAAATATAAACATTAAAGCATCTAAAGACTATACTACTGTTTCTACCGGAGGCATAGCACCGGAACTAACAGGTCAAGGCGGAGATATATTTATACAAGCTAATAATAATTTAAATATTCAATCACAAAAAGATACATTACTAAATCAATTAGGAGGCAGTTTGCATAACACTGCCGGAGTTGATATATCTTTAAAAGCAGGTTCTAATTATAATTTACAAGCTGCAGGACAGATAGCAACTGCTACTAACGGAACATATGGGTTAAGTGCAGGCGGGGATATTATCGAGTTAGGTGCTAATATACATATGAACGGTCCGCAGCCGCCTGCACCCGATTCTCCTACTGAAGCAAGTACACCTACTACTAATGGCAAAACTAATATATTGCCTGAGTTTAGTGATGCAAATAGATATAATAGAATGTCTCAGCCAGGAGTAACTACTATAGTATCTAGATTTAATACATTCGAACCGTGCCCTGAGCACAAAAATAAAGGAGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f31f6334a94fa7c16e6daaaf4296436dfe5106ac381e5069e0485fff9259bf35
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5904
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Integrative omics analysis of Pseudomonas aeruginosa virus PA5oct highlights the molecular complexity of jumbo phages Lood,C., Danis-Wlodarczyk,K., Blasdel,B.G., Jang,H.B., Vandenheuvel,D., Briers,Y., Noben,J.-P., van Noort,V., Drulis-Kawa,Z. and Lavigne,R. 2019 — GenBank
Genomics, Transcriptomics, and structural analysis of Pseudomonas virus PA5oct highlights the molecular complexity among Jumbo phages Lood,C., Danis-Wlodarczyk,K., Blasdel,B., Jang,H.B., Vandenheuvel,D., Briers,Y., Noben,J.-P., Kawa,Z. and Lavigne,R. 2019-06-22 — GenBank