Protein

View in Explore
Genbank accession
ABI94983.1 [GenBank]
Protein name
short tail fibers
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,88
Protein sequence
MSNNTYQHVSNESKYVKFDPVGSNFPDTVTTVQSALSKISNIGVNGIPDATMEVKGIAMIASEQEVLDGTNNSKIVTPATLATRLLYPNATETKYGLTRYSTNEETLEGSDNNSSITPQKLKYHTDDVFQNRYSSESSNGVIKISSTPAALAGVDDTTAMTPLKTQKLAIKLISQIAPSEDTASESVRGVVQLSTVAQTRQGTLREGYAISPYTFMNSVATQEYKGVIRLGTQSEINSNLGDVAVTGETLNGRGATSSMRGVVKLTTQAGIAPEGDGSGALAWNADVINTRGGQTINGSLNLDHLTANGIWSRGGMWKNGDQPVATERYASERVPVGTIMMFAGDSAPPGWIMCHGGTVSGDQYPDYRNTVGARFGGDWNNPGIPDMRGLFVRGAGTGGHILNQRGQDGYGKDRLGVGCDGMHVGGVQAQQMSYHKHAGGWGEYQRHEAPFGASVYQGYLGTRKYSDWDNASYFTNDGFELGGPRDALGTLNREGLIGYETRPWNISLNYIIKIHY
Physico‐chemical
properties
protein length:516 AA
molecular weight: 55433,81480 Da
isoelectric point:5,84762
aromaticity:0,07946
hydropathy:-0,46395

Domains

Domains [InterPro]
DC_0176
STR
1–437
DC_0176
G3DSA:2.10.280.10
Unmapped
246–286
G3DSA:2.10.280.10 IPR037053 IPR044916
IPR015173
STR
246–324
IPR015173 SSF88874
SSF69349
STR
246–346
SSF69349 IPR027448
IPR011083
ATT
337–392
IPR011083
ABI94983.1
1 516
Architecture
STR
ATT
STR
STR 1-323 | ATT 324-392 | STR 393-514 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage RB32
[NCBI] 		2681602 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Tequatrovirus
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ABI94983.1 [NCBI]
Genbank nucleotide accession
DQ904452.1 [NCBI]
CDS location
range 88113 -> 89663
strand +
CDS
ATGAGTAATAATACATATCAGCACGTATCAAATGAATCAAAATATGTTAAATTCGATCCAGTAGGATCGAATTTTCCTGACACTGTTACGACAGTGCAGTCTGCATTATCAAAAATAAGTAATATTGGCGTAAATGGTATTCCTGATGCAACTATGGAAGTTAAAGGAATAGCAATGATTGCGTCAGAGCAAGAGGTTTTAGATGGAACTAATAATTCTAAAATCGTTACACCCGCTACATTAGCAACAAGATTATTGTATCCAAATGCTACTGAAACTAAATATGGTTTAACACGCTATTCAACAAATGAAGAAACGTTAGAAGGCTCAGATAATAATTCATCAATAACACCACAAAAACTGAAATACCACACTGACGATGTGTTCCAAAATAGATATTCGTCTGAGTCGTCAAACGGGGTTATTAAAATATCATCTACACCTGCAGCTTTGGCTGGAGTTGATGATACTACGGCAATGACTCCATTAAAAACCCAAAAACTTGCAATAAAATTAATTTCACAAATAGCTCCTTCCGAAGATACTGCATCAGAATCTGTGAGAGGTGTAGTTCAATTATCTACTGTTGCGCAAACTCGTCAAGGAACTCTCCGCGAAGGATATGCAATTTCTCCGTATACCTTTATGAATTCTGTTGCAACACAAGAATATAAGGGTGTTATACGTTTAGGAACACAATCGGAAATTAACAGTAATTTAGGAGATGTTGCAGTAACAGGTGAAACATTAAATGGTCGAGGAGCTACTAGTTCTATGCGTGGAGTAGTTAAATTAACGACGCAAGCCGGTATTGCCCCCGAAGGTGATGGCTCTGGAGCATTAGCATGGAACGCAGATGTAATTAATACTCGCGGTGGACAAACTATTAACGGTTCTTTAAATTTAGACCATCTTACAGCAAATGGAATTTGGTCACGCGGCGGTATGTGGAAAAATGGCGATCAACCTGTTGCCACTGAAAGATATGCGTCCGAAAGGGTTCCAGTTGGAACTATTATGATGTTTGCGGGTGATTCTGCACCTCCAGGTTGGATTATGTGTCATGGTGGAACTGTGTCAGGAGACCAATATCCTGATTATAGAAACACAGTTGGAGCAAGATTTGGTGGTGATTGGAATAACCCCGGCATTCCTGATATGAGAGGTCTTTTCGTTAGAGGAGCTGGAACAGGCGGTCATATTTTAAATCAACGAGGACAAGATGGTTACGGGAAGGATAGACTTGGCGTAGGATGTGACGGAATGCATGTTGGTGGTGTCCAGGCACAACAAATGTCATACCATAAACACGCTGGTGGATGGGGAGAATACCAAAGACATGAAGCTCCATTTGGCGCGTCCGTTTATCAAGGATATCTTGGAACTAGAAAATATTCCGACTGGGATAATGCTTCATACTTCACTAATGATGGATTTGAATTAGGTGGACCGAGAGATGCCCTTGGTACACTTAATCGTGAAGGATTAATTGGTTATGAAACTAGACCATGGAATATATCATTAAACTATATTATTAAAATTCATTACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
41ecc31209c87e904df4d4ce8719ee807960989ef42912cd1caffd4bfdfd9507
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6719
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Comparative analysis of close relatives of Bacteriophage T4 Nolan,J.M., Rowe,R.D., Timpte,C.S. and Schluchter,W.M. 2009-07 — GenBank