Protein

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Genbank accession
YP_009612268.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,58
Protein sequence
MYKVFTEKNGVGTLLFDFSFVKDDNKTRALILKNRANDYLIGKTSILDISDIGHHTFTVTIPAGTKVYFEVQDFDCYLYPLDQPDVSFERVHVDLYDYNKNFAIDSHRGMVLGSETKIKIVNDVNIKSPCYTSSEENDAIFEEFAEIAKIELEKGLDNLRKSSFKELNRVLSGIKGGMYSFDDVKHIGFDMLTLDKKEIELSRLFGSSANGEIFTYWSELFFDSNNDSIVLDIPNDEVRFELVDHV
Physico‐chemical
properties
protein length:246 AA
molecular weight: 28184,41120 Da
isoelectric point:4,74381
aromaticity:0,12195
hydropathy:-0,26626

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009612268.1
1 246
Domain Start End Length (AA) Confidence
N-terminal 1 139 139 0,0037
Central domain 140 235 97 0,3081
C-terminal 236 246 10 0,9008
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-139
Central
140-235
C-terminal
236-246

Taxonomy

  Name Taxonomy ID Lineage
Phage Agrobacterium phage Atu_ph07
[NCBI] 		2024264 Uroviricota > Caudoviricetes > Polybotosvirus >
Host Agrobacterium tumefaciens
[NCBI] 		358 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Hyphomicrobiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009612268.1 [NCBI]
Genbank nucleotide accession
NC_042013 [NCBI]
CDS location
range 428645 -> 429385
strand +
CDS
ATGTATAAGGTTTTTACTGAGAAAAATGGGGTAGGCACTTTGTTGTTTGATTTTTCCTTTGTAAAGGATGATAATAAAACACGGGCGTTAATATTGAAAAATAGAGCTAATGATTATCTTATAGGGAAAACGTCTATTTTAGATATCAGTGATATAGGTCATCACACTTTCACTGTTACAATTCCAGCAGGAACAAAAGTATATTTTGAGGTTCAGGATTTCGATTGTTATTTATATCCGTTGGATCAACCAGATGTTTCTTTTGAACGTGTGCATGTTGATTTATACGATTATAATAAAAATTTCGCGATTGACTCTCATAGAGGGATGGTACTTGGTTCAGAAACAAAAATTAAAATAGTCAACGATGTTAATATAAAATCACCTTGTTATACCAGCAGCGAGGAAAACGACGCTATATTTGAGGAATTCGCGGAGATCGCAAAAATAGAGCTTGAGAAGGGTCTCGACAATTTGCGCAAATCATCCTTTAAAGAATTAAATCGCGTGTTGTCAGGAATTAAAGGCGGGATGTATTCTTTTGATGATGTTAAACATATTGGGTTTGATATGTTAACGCTTGATAAAAAAGAAATAGAATTGAGTAGGTTGTTTGGATCATCCGCTAATGGAGAAATTTTTACATATTGGAGTGAGTTGTTTTTTGATAGCAATAATGACAGTATTGTGTTAGATATCCCTAATGACGAGGTAAGGTTTGAATTGGTGGATCATGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
0bd9ef1b8f4fa8cd2a9e57066a2b8c9ac59b7f4deef6a002bfa45c17eabbfd87
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2974
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50