Protein

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Genbank accession
YP_009609269.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence RBPdetect
Probability 0,88
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MIQKVISGSKGGSQKPHNPVEMEDNLISINKIKILLAVSDGEIDETFSLKQLMFNSVPVQNEDGSFNFEGVKAEFRSGTQTQEYIKGMEDSSSEVTVNREVTTDNPYTISVTNKTLSAIRIKMFMPRGVRIESNGDKNGVRVEYEVQQAVDGGSFETVLTDVIEGKTMSGYDRSRRVNLPNFNNQVIFRVVRKTPDSSDSNVVDAIQVKSYAEVIDAKFRYPLTGLLFVEFDSKMFPNQLPTISIRKRWKIINVPSNYDPESRTYNGNWDGTFKKAWTNNPAWVLYDLMINQRYGLDQKELGISVDKWALYEAAQYCDQMVPDGKGGTEPRYLCDVIIQSQTDAYKVIRDICSIFRGMSFWNGESISVIIDRPREPAYIFTNDNVVNGDFSYTFASEKSMYTTCNVMFDDEQNMYQQDVEPVFDREATLRFGNNVTSITAIGCTRRSEANRRGRWILKTNLRSTTVNFATGLEGMIPTIGDVVAIADNFWSSNLTMNLSGRLLEVSGSQIFLPFRVDARAGDFIIVNKPDGKPVKRTISSVSADGKTIEVNIGFGFPVKPNTVFAIDRTDIALQQYVVTKIDKGDDDEEFTYKITAVEYDPNKYDEIDYGVNIDDRPTSIVEPDQIPRPENVQVSSESRIVQGMSVETMIVSWDKVPYAVFYDVQWRKDNGNWQNVPQTANKEVYVEGIYAGNYQVRVRSVAGSGTTSGWSNIVAATLTGKQGEPGRPINLTATDDVVFGIRTKWGFSDGSGDTAYTELQQSPDGTVDNASLLSLIPYPQHEYYHSPMPGGNIVWYRVRTVDRIGNVSQWTDFVRGMASTNVDDIIGEISVDIENSPGYKWLVDNATGNAAQNAANAEASIENALANDKDAIYMKKENGKRKAEYTKSLKLIADETQARVTAIEQLKASFGDQISASNSELREVIATETGALSREIDQLKAEIGDDIQASLTDIREAIANETEARTQADLTLSARLGNNEAALSQKLDSWSNADSTGAMYGVKLGLKYNGQEYSAGMAMSLIGSGAAVKAQILFEASRFAIMTGMNGQTQYPFVVENGQVILSSAIIKDGFITNAMIGNAIQSNNWDGNQGWHINKNGAAYFMNATVRGALYADNGSFAFNGTNNTVQINNNGITVNLPNGGRVVVGVW
Physico‐chemical
properties
protein length:1149 AA
molecular weight: 127234,77120 Da
isoelectric point:4,87078
aromaticity:0,09138
hydropathy:-0,38016

Domains

Domains [InterPro]
DC_0014
STR
1–1149
DC_0014
IPR053171
Unmapped
3–861
IPR053171 IPR015406
IPR055385
ATT
92–217
IPR055385 IPR032876 IPR013783
IPR003961
STR
628–722
IPR003961
IPR036116
STR
628–715
IPR036116
YP_009609269.1
1 1149
Architecture
STR
ATT
STR
ATT
STR
STR 1-91 | ATT 92-217 | STR 218-339 | ATT 340-488 | STR 489-1149
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009609269.1
1 1149
Domain Start End Length (AA) Confidence
N-terminal 1 505 505 0,8790
Central domain 506 1084 580 0,0638
C-terminal 1085 1149 64 0,5931
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-505
Central
506-1084
C-terminal
1085-1149

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage vB_SsoS-ISF002
[NCBI] 		2006922 Uroviricota > Caudoviricetes > Drexlerviridae > Tunavirus > Tunavirus ISF002
Host Shigella sonnei
[NCBI] 		624 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009609269.1 [NCBI]
Genbank nucleotide accession
NC_041995 [NCBI]
CDS location
range 15422 -> 18871
strand -
CDS
ATGATTCAAAAAGTGATAAGTGGATCTAAGGGTGGGTCACAGAAGCCTCATAACCCAGTTGAGATGGAAGACAATCTAATCTCAATCAACAAAATCAAAATCCTGTTAGCTGTATCTGATGGTGAAATTGACGAAACATTCAGCCTAAAGCAGTTGATGTTTAACTCAGTTCCGGTGCAAAACGAGGATGGATCGTTCAACTTCGAAGGGGTAAAGGCTGAGTTCAGGTCGGGAACTCAGACGCAGGAATACATCAAGGGCATGGAAGATAGCTCCAGCGAGGTAACTGTAAATCGTGAGGTTACTACCGATAACCCATACACGATCTCAGTAACCAACAAAACGCTGTCGGCAATCCGTATCAAAATGTTCATGCCTCGCGGCGTACGAATTGAAAGTAACGGCGATAAAAACGGCGTTCGCGTTGAGTACGAGGTGCAGCAAGCGGTTGATGGCGGTTCGTTTGAGACTGTTCTTACTGATGTAATCGAAGGCAAAACAATGTCGGGTTATGATCGAAGCCGTCGCGTAAACCTGCCGAACTTCAACAACCAGGTAATATTCAGAGTTGTTCGAAAGACTCCTGACTCAAGTGACTCGAATGTCGTTGATGCAATTCAGGTGAAAAGCTATGCCGAGGTGATTGATGCCAAATTCCGTTATCCTCTGACTGGTCTTCTTTTTGTCGAGTTTGATTCGAAAATGTTCCCAAACCAGCTGCCTACGATCTCAATTCGTAAGCGCTGGAAGATTATTAACGTTCCATCTAATTACGACCCTGAGTCTCGAACCTACAACGGAAATTGGGATGGGACTTTCAAGAAGGCTTGGACTAACAACCCGGCATGGGTTCTATACGACCTGATGATTAATCAGCGCTACGGACTGGATCAGAAGGAGCTTGGGATCTCCGTCGATAAATGGGCGCTCTACGAGGCCGCGCAATATTGCGATCAGATGGTTCCTGATGGGAAGGGAGGGACGGAGCCTCGATACCTTTGCGACGTGATAATCCAGTCTCAGACTGACGCTTACAAGGTTATTCGAGATATTTGCTCAATCTTTCGAGGTATGAGCTTTTGGAATGGCGAAAGCATTTCGGTAATCATCGACAGGCCGCGTGAACCTGCGTACATCTTCACTAACGACAACGTTGTTAATGGTGACTTCTCCTACACGTTCGCAAGCGAAAAGAGTATGTACACGACGTGTAATGTGATGTTTGATGACGAGCAAAACATGTATCAGCAGGACGTTGAGCCAGTATTCGATCGTGAGGCTACTCTACGGTTCGGGAACAACGTAACGAGCATTACAGCGATCGGCTGCACACGTCGAAGTGAGGCAAACCGACGCGGGAGATGGATTCTGAAAACTAACCTCCGCAGCACTACGGTAAACTTCGCTACCGGGCTTGAAGGTATGATCCCGACAATAGGTGATGTTGTGGCAATAGCCGACAACTTCTGGTCAAGCAACTTGACTATGAACCTATCAGGGCGCTTGCTTGAAGTGTCTGGAAGCCAGATTTTCTTGCCGTTCCGTGTGGATGCGCGCGCAGGTGACTTTATTATCGTAAATAAGCCCGACGGCAAGCCCGTGAAGCGCACAATCTCAAGTGTTAGTGCGGATGGTAAGACTATAGAGGTTAACATTGGCTTTGGCTTTCCTGTGAAGCCTAACACGGTATTCGCTATCGACCGCACCGACATTGCGCTACAACAGTACGTCGTGACAAAAATCGATAAGGGCGATGATGACGAGGAATTTACCTACAAAATCACGGCGGTGGAGTACGATCCTAACAAGTACGACGAGATTGATTACGGAGTTAACATCGACGACCGACCGACGAGCATCGTTGAACCAGATCAGATCCCTAGACCGGAAAACGTGCAAGTGTCCTCAGAGTCGAGAATCGTCCAGGGGATGAGCGTAGAAACGATGATTGTTAGCTGGGATAAAGTGCCGTACGCAGTTTTCTATGACGTACAGTGGAGAAAGGATAACGGCAACTGGCAAAACGTTCCGCAGACAGCAAACAAAGAGGTTTACGTTGAGGGTATTTACGCTGGCAACTATCAGGTTCGCGTTCGCTCCGTAGCTGGTTCCGGTACGACTTCAGGATGGTCAAATATCGTAGCTGCGACGCTGACTGGCAAACAAGGTGAGCCGGGCAGACCGATTAACCTTACGGCTACTGATGATGTTGTTTTTGGTATCCGTACAAAATGGGGGTTCTCTGATGGTTCTGGAGATACGGCCTATACAGAGTTGCAACAGTCACCGGATGGAACGGTTGACAATGCGAGTTTACTCTCTCTGATCCCGTATCCGCAGCATGAGTATTATCATTCACCGATGCCGGGCGGGAATATTGTGTGGTATCGGGTAAGGACGGTTGACAGGATCGGTAATGTGTCTCAGTGGACTGATTTTGTCAGAGGTATGGCATCAACAAACGTTGACGATATCATCGGAGAGATTTCTGTCGATATAGAAAACTCGCCTGGCTACAAGTGGCTTGTTGATAACGCAACAGGCAACGCGGCGCAGAACGCAGCGAACGCGGAAGCGTCAATTGAGAACGCGTTAGCTAATGACAAAGACGCGATCTATATGAAGAAGGAGAACGGAAAACGAAAGGCTGAGTACACGAAATCACTGAAACTTATTGCTGATGAGACGCAGGCACGAGTGACGGCGATCGAGCAATTGAAAGCAAGTTTTGGCGATCAGATTAGCGCAAGCAATAGTGAATTGCGTGAAGTTATCGCAACTGAGACAGGGGCGCTATCTCGTGAGATTGACCAACTCAAGGCAGAGATTGGTGATGATATTCAGGCAAGTTTGACCGATATCCGTGAAGCCATCGCGAACGAGACTGAGGCGAGAACGCAAGCTGACTTAACGTTAAGCGCGCGACTTGGGAATAACGAGGCAGCACTTTCTCAAAAACTTGACTCGTGGAGTAACGCCGATTCGACTGGTGCAATGTACGGCGTCAAGCTGGGCCTTAAGTATAATGGTCAGGAATACAGCGCAGGTATGGCTATGTCTCTGATTGGTTCTGGTGCGGCTGTTAAGGCTCAGATTCTTTTTGAGGCATCTCGATTTGCAATCATGACTGGCATGAACGGTCAGACTCAGTATCCATTCGTTGTTGAGAATGGTCAGGTTATTCTAAGTAGCGCGATCATCAAGGATGGATTTATTACTAACGCAATGATTGGTAACGCTATTCAGTCTAACAATTGGGATGGAAATCAAGGGTGGCATATTAACAAGAATGGTGCTGCGTACTTCATGAATGCTACCGTAAGGGGTGCTCTGTATGCGGATAACGGATCGTTTGCATTTAACGGAACAAATAACACGGTTCAGATAAACAATAACGGGATCACGGTTAACCTACCTAACGGGGGCCGAGTGGTTGTTGGTGTCTGGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e3611f66177e00a212896a7af783f34c1a81a9e636c5900a266a13aa7adfc6fd
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2989
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50