Protein

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Genbank accession
AFV51104.1 [GenBank]
Protein name
tail tubular protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MEDLAQGEGKVNQQRGGKQYNLGKVDLPYAVLTEAALKALDVTKVTKAKLNKIVYKYDIADNSGITPNVGLGSWIKSTDLADTSVEMYTGNNLEDWARDVDQALVNGGHWVDAGEWSTDPVVTESNQYISYAGTNQRFRPLSLPYHVNSSAHPDPNALLPNPSTGYEGELVDISQFATVLDITAAVDELRDSISYFKCTNESNLALGVTVKGETVPLEEGQVWTVISRGQCEFLLEASGSGDGIVSIPVGSLFANLVEQDYTSVKNLGGEDTLSYNLSQLLKSISTSSINTKLKLGSNHGYSGNMFLSDGQAVEGKGSGNLISSNKGTRLRPTDENAKIRLFPHSKLSDIFIDGKYDGTNKAVDGIYLKPHLSGDSDYVAGDPTAASIIWTKLSNINIQNFANNISIEGNAYNLWFENIVSVAGRLKQVGGGESTFMASNFSDTTGQEVVYNENGKMSFHGGAIQNTNGGYPCVVNKGKILMQGVYMENARAGSNQNAYLVDNYGTVTIMQPKSMAMAEKGIRGRAGSRTYLHDCEFTGNNASTNEVFNGRGDDNNVGGGYLYFENLLLNQGENSGDLNYIEWTIGGYSSEGYSIECGSEKILYENRGDSTTGLSISGGTLAANNTDRYLDEQSLLLTGASTTPTLTVSKTLRGLAGHLVLLRVAINGQVGTTDNLHPLINWGASDVVAKYTNVELDISTSDGNVDKWYYLTTCAVLKPGVSEHNIAATLLTSLGGSGTSDDKLYIDKVQIVDCGLVYKTFDQN
Physico‐chemical
properties
protein length:764 AA
molecular weight: 82207,26690 Da
isoelectric point:4,79013
aromaticity:0,08115
hydropathy:-0,31361

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AFV51104.1
1 764
Domain Start End Length (AA) Confidence
N-terminal 1 276 276 0,9948
Central domain 277 588 313 0,9656
C-terminal 589 764 175 0,9808
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-276
Central
277-588
C-terminal
589-764

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage VPMS1
[NCBI] 		1233488 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFV51104.1 [NCBI]
Genbank nucleotide accession
JX880072 [NCBI]
CDS location
range 19903 -> 22197
strand +
CDS
ATGGAAGACCTTGCGCAAGGCGAAGGTAAAGTCAATCAACAGCGAGGGGGCAAACAGTACAATTTAGGCAAGGTTGACCTACCTTATGCTGTGTTGACAGAAGCAGCATTGAAAGCTCTAGATGTAACTAAGGTTACTAAAGCTAAACTAAACAAAATTGTCTACAAGTATGATATAGCAGATAACTCCGGAATTACGCCGAATGTGGGATTAGGCTCTTGGATTAAGTCTACTGACCTAGCTGATACTAGTGTAGAAATGTACACTGGCAATAACCTAGAAGACTGGGCCAGAGACGTCGACCAGGCGCTTGTTAACGGTGGTCACTGGGTTGATGCGGGTGAATGGTCAACAGACCCGGTTGTAACAGAGTCTAACCAGTACATTTCCTATGCAGGAACTAACCAACGTTTTAGGCCTCTTTCACTGCCCTATCATGTTAATAGTTCAGCGCACCCTGACCCTAATGCGCTGCTGCCTAATCCTTCAACCGGCTATGAAGGTGAGTTAGTTGACATTAGTCAGTTTGCTACGGTTCTAGACATTACTGCGGCAGTAGACGAGCTTCGTGACTCAATCAGTTACTTTAAGTGTACAAATGAGTCTAACCTAGCGCTAGGTGTTACGGTCAAAGGGGAGACTGTGCCATTAGAAGAGGGGCAGGTATGGACGGTCATTAGTAGAGGTCAGTGCGAGTTCCTACTAGAGGCTTCAGGCTCTGGAGATGGCATTGTCTCTATTCCTGTCGGCAGTTTGTTCGCGAATCTAGTAGAGCAAGATTATACATCAGTAAAGAATCTAGGTGGAGAAGACACACTTTCTTATAACCTATCTCAACTGCTAAAGTCAATCTCAACAAGTTCGATAAACACAAAGTTAAAGCTAGGTAGCAATCACGGATATTCTGGTAACATGTTTCTTTCCGATGGCCAGGCGGTAGAAGGCAAAGGTTCAGGCAACCTGATTTCATCAAATAAAGGTACAAGACTAAGACCTACTGATGAGAATGCGAAAATAAGGCTATTTCCTCACTCCAAACTGTCAGATATATTCATTGATGGTAAATATGATGGCACTAATAAGGCTGTTGATGGTATTTACTTGAAACCGCATTTATCAGGAGACTCAGACTATGTAGCTGGAGACCCTACAGCTGCGTCAATTATCTGGACAAAACTGTCAAATATTAATATCCAGAACTTTGCAAATAACATATCAATCGAAGGTAACGCATACAACCTATGGTTCGAAAATATAGTTAGCGTAGCTGGTAGGCTAAAACAGGTCGGCGGTGGCGAGTCTACATTTATGGCGAGTAATTTCTCTGACACTACCGGCCAGGAAGTTGTCTATAATGAAAACGGTAAAATGTCATTTCATGGCGGTGCGATACAGAATACAAACGGCGGATATCCTTGTGTAGTAAATAAAGGCAAGATATTGATGCAAGGTGTATACATGGAGAATGCTAGAGCTGGTTCTAACCAAAATGCTTATTTAGTTGACAATTACGGAACCGTAACAATTATGCAGCCCAAGTCCATGGCTATGGCTGAAAAAGGCATAAGAGGCCGAGCTGGTAGCCGCACTTACCTTCATGACTGTGAGTTCACCGGGAACAACGCTAGTACAAATGAAGTTTTTAACGGCCGAGGCGATGATAACAATGTTGGTGGTGGTTACTTGTACTTTGAAAACCTCCTACTTAATCAAGGGGAAAACTCAGGCGACTTGAACTACATCGAGTGGACTATTGGTGGTTACAGCTCAGAAGGTTACTCGATTGAGTGTGGCAGCGAAAAGATTCTGTATGAAAATAGAGGTGACAGTACTACTGGCCTTTCTATTTCTGGCGGTACATTAGCGGCAAACAATACAGATAGATACCTAGATGAGCAATCCCTTTTGCTTACAGGTGCATCAACTACTCCGACTCTGACCGTATCAAAGACGCTAAGGGGTCTCGCTGGGCACTTAGTTCTGCTAAGGGTTGCAATCAATGGACAAGTTGGGACTACAGACAACTTGCACCCTTTGATTAACTGGGGAGCTAGTGATGTAGTTGCCAAGTACACAAACGTTGAGCTGGACATATCCACAAGCGACGGGAACGTTGATAAGTGGTACTACCTAACAACATGTGCTGTTCTTAAGCCTGGTGTCAGCGAGCACAATATAGCCGCAACACTTTTAACTAGTTTAGGCGGGTCAGGTACGTCTGATGACAAGTTGTACATAGACAAAGTCCAAATCGTAGACTGTGGACTAGTTTATAAGACATTTGACCAGAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
64efb848a89cf7b53b142cff4ba0858321581ce30f9c8ff0f2e9066f1f11d153
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7764
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50