Protein

View in Explore
Genbank accession
YP_009797816.1 [GenBank]
Protein name
tail fibers protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,63
Protein sequence
MEVQGSLGRQIQGISQQPAAVRLDGQCTDMINMVPDIVNGTQSRMGSTHIARLLDSGDENMATHHYRRGDGVEEYFFIMKKGSVPEIFDKEGRKCTVTSQDAPMAYLAEVVNPREDVQFMTIADVTFMLNRRKVVKARSDKSPKVGNKAIVFSAYGQYGTSYTISINGEKAATFKTPDGGDPSHVEQIRTEYIATKLYESLQTWNKASQYTLQREGTSIYIETKDGSDFTITTTDGAKGKDLVAIKNRVSSTDLLPSRAPEGYKVQVWPTGSKPESRYWLEAVPKEGGNLVAWQETVAADVLLGFDKDTMPYIIERTGIVGGVAQFKIRHGDWEDRKVGDDLTNPMPSFIDEDVPQAIGGMFMVQNRLCVTAGEAVIATRTSHFFDFFRFSAVSEVATDPFDIFSDASEVYQLKHAVTLDGATVLFSDTSQFILPGDKVLEKSNVILKPATTFEVDNRVPPVATGESVMFATSEGAYSGVREFYTDSYSDTKKAQAVTSHVNKLIEGNITHMVASTNINRLLVVTDRDPNIVYCYDWLWQGTDRVQSAWHKWVWPKDTLIRSMFYSSELLYLLVERGNTGLYLEAMDMGDALTYGLVDRIRLDRQAELIFTYDANNDQWVSNELPWKPTDPTLLDCVITQGWPAYIGGSFHFEYDEASNKLSTTFDLSEEDTNAVTVVGQLYQQEFEPTQVVIRDNQDRVSYIDVPVVGLVHLNLDKYPDFEVHIKNLKSGKLRKALASNRKGGALNNIVGYVKPEEGSFKFPLRSLSTDTVYRIIVNSPHTFQLRDIEWEGSYNPTKRRV
Physico‐chemical
properties
protein length:801 AA
molecular weight: 89863,11110 Da
isoelectric point:5,20284
aromaticity:0,09988
hydropathy:-0,36192

Domains

Domains [InterPro]
IPR058003
TTP
3–800
IPR058003
YP_009797816.1
1 801
Architecture
TTP
TTP 3-800 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009797816.1
1 801
Domain Start End Length (AA) Confidence
N-terminal 1 141 141 0,9927
Central domain 142 356 216 0,0728
C-terminal 357 801 444 0,3024
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-141
Central
142-356
C-terminal
357-801

Taxonomy

  Name Taxonomy ID Lineage
Phage Citrobacter phage vB_CroP_CrRp3
[NCBI] 		2079275 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Citrobacter rodentium
[NCBI] 		67825 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009797816.1 [NCBI]
Genbank nucleotide accession
NC_047920.1 [NCBI]
CDS location
range 22558 -> 24963
strand -
CDS
ATGGAAGTACAAGGTTCATTAGGTCGTCAGATTCAAGGTATCAGTCAACAGCCAGCTGCTGTAAGATTAGATGGTCAATGCACCGATATGATCAATATGGTGCCTGATATAGTTAATGGTACACAATCTCGCATGGGAAGTACACACATTGCTAGGCTTCTTGATTCTGGTGATGAAAATATGGCAACACATCATTACCGCAGAGGTGACGGTGTAGAGGAATACTTCTTCATCATGAAGAAAGGTAGCGTGCCAGAAATATTTGACAAAGAAGGGCGTAAATGCACTGTGACCTCTCAGGATGCACCTATGGCTTATCTTGCTGAGGTTGTGAATCCAAGAGAAGACGTGCAGTTTATGACTATTGCTGATGTAACATTTATGCTTAACAGGCGTAAAGTGGTGAAAGCTCGTAGCGATAAGTCCCCCAAAGTGGGAAACAAGGCTATTGTGTTTTCTGCCTACGGGCAGTATGGTACTTCGTACACCATCTCTATTAACGGTGAGAAAGCGGCGACCTTCAAAACTCCAGATGGGGGCGACCCTAGTCATGTAGAACAGATTCGCACTGAGTACATAGCCACTAAATTATATGAGAGTTTACAGACATGGAATAAAGCATCCCAGTACACATTGCAAAGAGAAGGTACTAGTATCTACATTGAAACTAAAGATGGGAGTGATTTCACTATTACTACCACTGATGGGGCCAAAGGCAAGGACTTGGTTGCTATAAAGAACCGAGTGTCATCTACAGACTTACTTCCATCAAGAGCACCAGAGGGGTACAAGGTGCAGGTGTGGCCTACGGGGAGTAAACCAGAATCTCGGTATTGGCTAGAGGCTGTACCTAAAGAGGGAGGTAACTTAGTTGCTTGGCAAGAAACTGTTGCAGCAGATGTGTTACTTGGATTTGATAAAGACACTATGCCTTATATTATAGAGCGTACAGGTATTGTCGGAGGTGTGGCACAGTTTAAGATACGACATGGCGATTGGGAAGATCGTAAGGTAGGCGACGACTTGACGAACCCTATGCCTTCTTTTATTGACGAAGATGTGCCACAGGCGATTGGTGGCATGTTCATGGTGCAGAACCGCCTTTGTGTTACAGCAGGTGAAGCTGTTATAGCAACTAGGACTTCTCATTTCTTTGACTTCTTCCGCTTCTCCGCAGTGTCTGAGGTGGCAACAGACCCTTTCGATATTTTCTCCGATGCAAGCGAGGTATACCAGCTTAAACATGCAGTAACCCTAGATGGGGCAACGGTATTATTCTCAGACACATCTCAGTTCATACTTCCTGGGGATAAAGTATTAGAGAAATCTAATGTTATACTCAAGCCTGCTACAACTTTCGAAGTGGACAACAGGGTGCCACCTGTGGCAACGGGTGAGTCCGTGATGTTTGCTACAAGTGAAGGCGCTTACTCTGGTGTGCGTGAGTTTTATACAGATTCTTACAGTGACACTAAGAAGGCGCAGGCTGTTACTAGTCATGTTAACAAGTTGATAGAAGGCAACATAACGCATATGGTTGCTAGCACTAATATCAACAGGTTACTTGTGGTAACAGACAGAGATCCTAATATTGTCTATTGCTATGACTGGTTGTGGCAAGGGACAGATCGTGTACAATCTGCATGGCATAAGTGGGTGTGGCCTAAAGATACTCTGATTCGCTCTATGTTCTATTCCTCAGAGCTATTGTATCTCCTTGTAGAACGTGGCAACACTGGTTTGTATCTAGAGGCGATGGATATGGGTGATGCTCTTACTTATGGTTTAGTTGACAGAATTAGACTGGATAGGCAAGCAGAGCTAATCTTCACCTATGATGCTAATAACGACCAGTGGGTGTCTAATGAGTTACCTTGGAAGCCTACTGACCCGACCTTACTTGATTGTGTGATAACTCAAGGGTGGCCAGCTTATATTGGTGGTTCTTTTCATTTTGAATACGATGAAGCCAGTAATAAACTAAGTACAACTTTTGATTTATCAGAGGAAGATACTAATGCTGTGACTGTCGTAGGACAGTTGTATCAGCAGGAGTTTGAGCCAACACAGGTCGTTATTCGAGATAATCAAGATAGAGTGTCCTACATAGATGTACCAGTGGTAGGTTTAGTTCACCTTAACTTAGATAAATATCCTGACTTTGAAGTTCACATCAAGAACTTAAAGAGTGGTAAACTAAGAAAAGCCTTGGCATCTAACAGGAAAGGTGGGGCACTTAATAATATTGTTGGTTATGTCAAGCCAGAAGAAGGGTCATTCAAATTTCCACTAAGGTCACTCAGTACAGATACTGTTTATCGTATCATTGTTAACTCCCCTCATACATTCCAACTCAGGGATATTGAGTGGGAAGGTTCATATAATCCTACTAAGAGGAGAGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4f308e589e391b978c6bce3f73e27b0288156d7100462108fc4e5d2de5a9a0b9
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9128
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Citrobacter rodentium phages Mizuno,C.M., Debarbieux,L. and Roach,D.R. 2008-04 — GenBank