Protein

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Genbank accession
AXC34713.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 0,54
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,64
Protein sequence
MADYGQLPIENIWSTGGDMVAPTPAQQQGGWGIQSVPRQWWNWKWNLHDTNLAYLLQKGIPEWTSTQEYIANKSFCTRNGFVYKAVRTHTGSDPATVSSNWARAFADFTTASSALGSLTPREGGIPFFISASGAGVFDSTDYGRGMLNVANAAGARNYISAQESSVVLSNLSTVTRAANAVPYFNTDTSMATFNITAFGRGLVNAGDATNARTFLGLANSATITADPANRAHTLVYRDAAGNFNAGVITATLSGNATTASKLRAPVTINGVAFDGSQNIVLPGLDTSYAGVVARLHINGANMTGTDKTTQLALRNKSDTDWISLVTPDDSSLVFQFRGPEAANATLRVNSNVVFHAGNQYGLGATQTQARERLMVDRLAQNTTQTVLYNADKSRYFWLQDNGVSGIWDATTNTPLWRFSRLGQLDYGTVPVAQITGLANSATIPASASNLTNQIVVRSGTGDIAVQGVTAFGAVLGTDYIRVRASTGNAHLVFQRNDGAEVGLIWGIPSANSLNFRTAGGATGMSLAGQDLTVVGRVNAATLNSSGNVNSGNSVIAAGNVQAAGRVYCGDAFMSSNGNLTGGAFGSYGTLTNWVDSVYARKTDVMTDAQILAATSRGSAQAVGTYVFAIAASGSGDVGTVVAGTSLRSSSPVNYHGTTLSGSYRCMGRFGAGGSNQITLFQKVAA
Physico‐chemical
properties
protein length:685 AA
molecular weight: 71699,74940 Da
isoelectric point:8,96679
aromaticity:0,08759
hydropathy:-0,07372

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AXC34713.1
1 685
Domain Start End Length (AA) Confidence
N-terminal 1 313 313 0,6004
Central domain 314 512 200 0,1697
C-terminal 513 685 172 0,8451
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-313
Central
314-512
C-terminal
513-685

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage SRT6
[NCBI] 		2268590 No lineage information
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AXC34713.1 [NCBI]
Genbank nucleotide accession
MH370478.1 [NCBI]
CDS location
range 46570 -> 48627
strand -
CDS
ATGGCTGATTACGGTCAACTACCTATTGAAAATATCTGGTCCACAGGCGGGGATATGGTAGCCCCGACCCCAGCGCAGCAGCAAGGCGGATGGGGTATTCAGTCGGTTCCTCGCCAGTGGTGGAACTGGAAATGGAACCTTCACGATACCAACCTAGCGTATCTGCTACAGAAGGGCATCCCAGAATGGACCAGCACTCAAGAGTATATCGCAAACAAGTCGTTCTGCACAAGAAACGGTTTCGTCTACAAGGCTGTCCGTACCCATACAGGTAGCGACCCGGCCACCGTTAGTTCTAACTGGGCCCGAGCTTTCGCAGACTTTACCACAGCTAGCTCTGCACTTGGAAGCCTGACTCCGAGAGAAGGAGGGATTCCTTTCTTCATTAGCGCATCTGGTGCAGGTGTGTTTGACTCTACGGATTATGGACGTGGCATGCTGAACGTAGCCAACGCAGCGGGAGCTAGAAACTACATTTCGGCTCAAGAGAGTTCTGTTGTCCTGTCTAACCTATCTACTGTGACTAGGGCTGCCAACGCGGTTCCGTACTTCAACACCGACACCTCGATGGCGACCTTCAACATTACAGCGTTCGGAAGAGGCCTAGTCAACGCTGGCGATGCAACTAACGCAAGAACCTTCCTAGGCCTAGCTAACTCTGCTACTATCACGGCTGATCCAGCCAACAGAGCACACACTCTGGTCTATAGAGACGCTGCTGGTAACTTCAACGCTGGTGTGATTACAGCCACTCTTTCTGGTAACGCGACTACAGCCAGCAAGCTCAGGGCTCCAGTTACGATTAACGGCGTAGCGTTCGACGGAAGCCAGAACATTGTTCTGCCGGGCCTAGATACAAGCTACGCCGGGGTTGTAGCGAGGCTCCATATTAATGGAGCTAACATGACCGGAACAGATAAGACTACCCAGTTGGCTCTTAGAAATAAATCTGATACAGATTGGATTAGCTTGGTGACTCCTGATGACAGCTCGTTGGTATTTCAATTTAGAGGGCCAGAAGCGGCTAACGCCACTCTGCGGGTTAACTCTAATGTTGTGTTCCACGCGGGAAACCAGTATGGACTAGGAGCTACTCAAACTCAAGCCAGAGAGCGGCTCATGGTTGACAGGCTGGCACAGAACACGACTCAGACTGTGCTGTACAACGCAGATAAGAGCAGGTACTTCTGGTTGCAAGATAACGGTGTTTCCGGTATCTGGGACGCAACGACTAACACCCCTCTATGGCGTTTTTCTAGACTAGGCCAGCTCGACTACGGAACAGTCCCTGTTGCACAAATTACAGGATTGGCCAACTCCGCGACAATTCCGGCATCCGCCTCCAATCTGACTAATCAGATTGTTGTGAGGAGCGGAACAGGAGATATCGCAGTACAAGGCGTTACAGCGTTTGGCGCTGTTCTGGGAACAGACTATATTAGAGTAAGAGCCAGCACTGGTAACGCTCACCTAGTATTCCAGAGGAATGATGGAGCAGAGGTAGGGCTTATTTGGGGAATCCCGTCTGCCAACTCTCTGAACTTCAGGACCGCAGGCGGTGCGACAGGCATGTCTCTGGCTGGTCAGGACTTGACTGTAGTTGGCAGGGTGAATGCTGCGACACTCAATTCGTCTGGCAACGTCAACTCTGGCAACAGCGTGATTGCTGCCGGGAACGTGCAGGCTGCTGGCCGTGTGTACTGCGGCGATGCTTTTATGAGCAGCAACGGCAACCTTACTGGCGGAGCTTTCGGCTCTTATGGGACTCTTACCAACTGGGTAGACTCTGTATACGCCAGAAAAACTGACGTAATGACTGATGCCCAAATCTTGGCTGCCACTTCTAGAGGTAGTGCTCAGGCTGTGGGAACATATGTCTTTGCGATTGCAGCTAGCGGAAGTGGGGATGTTGGGACTGTAGTAGCTGGTACGTCTCTAAGGTCTTCGTCTCCCGTCAACTACCATGGAACTACGCTATCCGGTAGCTACAGGTGCATGGGTAGGTTCGGAGCCGGAGGTTCTAACCAGATTACCTTGTTCCAGAAGGTTGCAGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b6de989d7539feb2f4a2f3738a8d759a5529adb43ca1a1bde3e1d4c33e0d6ee0
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6455
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic sequence of Pseudomonas aeruginosa phage SRT6 Fan,X., Li,Q., Yi,T., Zhang,F., Zhang,C. and Ma,H. 2018-11-15 — GenBank