Protein

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Genbank accession
AMR57476.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,51
Protein sequence
MSIVIRRKNGDVLWFDAITEYGLTYQSSVTKHPVATGGYVSDHTTNENLIININAVLTDADFNINRPQNLGKLSTFDSGSVSVDDRGLYKPVNKQYTTNSGSITPVKIESIGSINRLLPEVIAQFTKDSIPVATVTPQSRAKTARAVKRELISMRNNREEFQVLELLDDFVIESYGPCIFTNLSFKEDSTTGEGVYPSMTIEEVTFTNLEEISVKVKTSNKGRKSGAAKDKLLETPPDNAPRTYTKMSSSAAAS
Physico‐chemical
properties
protein length:254 AA
molecular weight: 27940,11740 Da
isoelectric point:6,19542
aromaticity:0,07087
hydropathy:-0,37283

Domains

Domains [InterPro]
IPR048494
ATT
15–214
IPR048494
DC_1100
STR
26–254
DC_1100
AMR57476.1
1 254
Architecture
ATT
STR
ATT 15-214 | STR 215-254
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AMR57476.1
1 254
Domain Start End Length (AA) Confidence
N-terminal 1 62 62 0,7072
Central domain 63 243 182 0,3579
C-terminal 244 254 10 0,9927
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-62
Central
63-243
C-terminal
244-254

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_PsyM_KIL2
[NCBI] 		1777066 Uroviricota > Caudoviricetes > Vandenendeviridae > Flaumdravirus > Flaumdravirus KIL4
Host Pseudomonas syringae pv. porri
[NCBI] 		83964 Pseudomonadota > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas > Pseudomonas coronafaciens

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AMR57476.1 [NCBI]
Genbank nucleotide accession
KU130127.1 [NCBI]
CDS location
range 37632 -> 38396
strand +
CDS
ATGTCCATTGTAATTAGAAGAAAAAACGGGGACGTGTTGTGGTTTGACGCAATCACTGAGTATGGCTTGACCTACCAATCCAGCGTAACCAAACACCCTGTCGCCACAGGTGGTTACGTATCAGACCACACCACAAATGAAAACCTCATCATAAACATCAATGCTGTGCTCACTGACGCCGACTTCAATATAAATCGACCTCAGAATCTAGGGAAACTCTCCACATTTGATTCGGGTAGCGTTAGTGTTGATGATAGAGGCTTATATAAACCTGTTAATAAGCAATACACCACAAACAGTGGCAGTATCACTCCTGTAAAAATTGAATCTATAGGCAGCATAAACAGATTGCTGCCTGAGGTTATCGCACAGTTTACAAAGGACAGTATACCCGTAGCCACTGTCACTCCCCAGAGTAGGGCTAAAACAGCTAGAGCTGTTAAGCGTGAGTTGATCAGTATGAGAAACAACAGAGAGGAGTTTCAAGTATTAGAACTCCTTGATGATTTTGTTATTGAGAGCTACGGCCCTTGCATATTTACAAACTTGTCCTTTAAAGAGGACTCTACAACTGGGGAAGGTGTTTACCCAAGTATGACTATAGAGGAAGTAACTTTCACTAATTTGGAAGAAATCAGTGTGAAAGTAAAGACTTCTAATAAAGGTAGAAAGTCTGGTGCTGCGAAAGATAAGCTGTTAGAAACACCACCTGACAACGCACCAAGAACTTACACTAAAATGTCTAGCAGCGCTGCTGCCTCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8cceffc50d894ed1a5508422e83e4ab38a0798e4c6c709a492312f324dabb5d8
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7261
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of Novel Bacteriophages for Biocontrol of Bacterial Blight in Leek Caused by Pseudomonas syringae pv. porri Rombouts,S., Volckaert,A., Venneman,S., Declercq,B., Vandenheuvel,D., Allonsius,C.N., Van Malderghem,C., Jang,H.B., Briers,Y., Noben,J.P., Klumpp,J., Van Vaerenbergh,J., Maes,M. and Lavigne,R. 2016 27014204 GenBank