Protein

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Genbank accession
YP_009203189.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAGVNGRYDSVILGVSQQTPHDRRSGQMEGQDNFLSDPVRGLARRWGTKETARQNVASASLSDSVLTALAGKFMTKPFYCDGREYELIYAKQPTPETGALFCYDRLNKKFLNVQYGGGAGSLASQIKTQGISSMVNIGRFMLIGVNNHKPTYQTVQVMPTVNQARPGVIWIRQGSYSRTFSVDIRRPDGSVATVSHKTMSASYEGILDTSSCVWNKDDPGAYNKCVADITNAYNTAVTKHIAASTEDIQPDVIAQKFADKIRTQLNLGNNIAVRGAYIFFSTGANITNVTSTDGGDATYMRTIVDTVDDIDKLSPWHYNGMVMRISPKKQSDKDAFYVRATTKNGDNFGEVSWKECPGKEFRPQSAFCHAWADGTTLFIGSNPAELNAISQNKAGSPLYENSVVGDEKTSPVPYFLTGRTINYLGIFQDRLLISSGAVVFASRPGDYFNWFRATVLNVEDNDPVEMYALGSEDDVIRWDSSFDRNHILHGERNQYLLPGRSILSPKNPSIQIMGSLQGTVGSEPKSVGSYVFFTKGTTYGGSLHQIQMGASTDSNESYECSSQLDTYISGKPVQITAMISPYYTFLRLNNSLNAVWVYTYLDSMQGGERMYDSWSKWTWDPILGPCCGLSHFNDELVKFSFRRGLGGTFIVADECFVHSETSPDPYMDSMRNFGQVMAELPNWPKEITDKMYVVYGRTSEYNLLGAPYNRLAIDMPELLQPANAAKAWAGFNYDAICRTTNPFMRDRDGKTIINGRLTLSNLTLSLNNSGGVEGFVEFSGRRKQTVNFEGRILTRITNKVGRVPLVDYGVKLPVFHEVRECQVEFRALTWLPLTVSGIEWKGQYFNNLRRV
Physico‐chemical
properties
protein length:851 AA
molecular weight: 94799,72890 Da
isoelectric point:7,51311
aromaticity:0,10811
hydropathy:-0,35934

Domains

Domains [InterPro]
IPR058003
TTP
1–620
IPR058003 IPR058003
DC_0058
STR
1–851
DC_0058
YP_009203189.1
1 851
Architecture
STR
STR 1-851
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009203189.1
1 851
Domain Start End Length (AA) Confidence
N-terminal 1 159 159 0,8026
Central domain 160 358 200 0,4409
C-terminal 359 851 492 0,3815
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-159
Central
160-358
C-terminal
359-851

Taxonomy

  Name Taxonomy ID Lineage
Phage Yersinia phage vB_YenP_ISAO8
[NCBI] 		1675027 Uroviricota > Caudoviricetes > Autographivirales > Melnykvirinae > Aghbyvirus
Host Yersinia enterocolitica
[NCBI] 		630 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009203189.1 [NCBI]
Genbank nucleotide accession
NC_028850 [NCBI]
CDS location
range 23896 -> 26451
strand +
CDS
ATGGCAGGTGTAAACGGACGATATGACTCCGTTATCCTGGGGGTGTCTCAACAGACGCCCCATGACCGCCGTAGTGGTCAGATGGAAGGACAGGATAACTTTTTAAGTGACCCGGTACGTGGCCTGGCCCGTCGCTGGGGTACAAAGGAAACAGCAAGACAGAACGTAGCATCAGCATCCCTATCGGATAGCGTGCTCACTGCACTTGCAGGTAAATTCATGACGAAGCCATTCTACTGTGATGGTCGGGAATATGAGCTTATCTATGCAAAACAACCCACACCAGAGACAGGTGCGTTATTCTGCTATGACAGGCTGAACAAGAAGTTCCTGAATGTCCAGTACGGTGGCGGTGCTGGTAGCCTGGCGAGTCAGATTAAGACTCAGGGTATCTCCAGCATGGTTAACATTGGTCGATTCATGCTTATCGGCGTGAACAACCACAAGCCAACCTACCAGACTGTGCAGGTTATGCCTACAGTGAACCAGGCCCGACCGGGTGTTATCTGGATTCGCCAGGGCAGCTATTCCCGTACCTTCTCTGTGGATATACGCCGACCTGACGGCTCAGTCGCCACGGTTAGTCACAAGACTATGAGCGCATCCTATGAGGGCATCCTGGATACCTCCAGTTGTGTGTGGAACAAGGATGACCCAGGTGCGTACAACAAGTGTGTAGCGGACATCACGAACGCCTACAACACGGCAGTGACGAAGCACATCGCAGCGTCTACTGAGGACATTCAGCCTGACGTTATCGCTCAGAAGTTCGCGGACAAGATTCGTACACAGCTTAACCTGGGTAACAACATCGCAGTGCGCGGGGCATACATCTTCTTCTCTACTGGAGCGAACATCACGAACGTGACCAGTACGGACGGCGGTGATGCCACCTACATGCGAACCATCGTTGATACTGTGGACGACATCGACAAGCTCTCCCCGTGGCACTACAACGGAATGGTGATGCGCATCTCTCCTAAGAAGCAGTCTGACAAGGATGCTTTCTACGTGAGAGCGACCACTAAGAACGGCGACAACTTCGGTGAGGTGTCCTGGAAGGAGTGTCCTGGCAAAGAGTTCCGGCCTCAGTCGGCATTCTGTCACGCATGGGCTGATGGCACTACCCTGTTCATCGGCAGTAACCCGGCAGAGCTTAACGCTATCTCTCAGAACAAGGCAGGCTCACCGCTGTACGAGAACAGCGTAGTCGGTGATGAGAAGACTTCTCCAGTCCCGTACTTCCTGACAGGGCGCACCATTAACTACCTGGGTATCTTCCAGGACCGACTGCTTATCTCTAGCGGTGCGGTGGTGTTCGCTTCCCGGCCCGGTGATTACTTCAACTGGTTCCGCGCTACGGTGCTGAACGTTGAGGACAATGACCCGGTTGAGATGTACGCCCTGGGTAGTGAGGATGACGTGATTCGCTGGGACTCCAGCTTTGACCGTAACCACATCCTACATGGTGAGCGTAACCAGTACCTGCTGCCAGGTCGAAGCATCCTATCCCCTAAGAACCCGTCGATTCAAATCATGGGTAGCTTGCAGGGTACGGTCGGTTCAGAGCCTAAGTCGGTCGGCTCCTACGTGTTCTTCACGAAGGGTACGACTTACGGCGGCAGTCTGCACCAGATTCAGATGGGTGCCAGTACGGACAGTAACGAGAGCTATGAGTGCTCCAGCCAGCTTGATACCTACATCAGCGGCAAGCCTGTGCAGATTACGGCAATGATTTCGCCCTACTACACGTTCCTGCGACTCAACAACTCGCTCAATGCAGTGTGGGTTTATACCTACCTGGATTCGATGCAGGGTGGCGAGCGTATGTACGATAGCTGGTCGAAATGGACGTGGGACCCAATCCTGGGGCCTTGCTGTGGTCTGAGCCACTTCAATGACGAACTGGTTAAGTTCTCATTCCGGCGTGGCCTGGGCGGTACGTTCATCGTTGCTGACGAGTGCTTCGTGCATTCGGAAACCTCTCCCGACCCGTACATGGACTCAATGCGTAACTTCGGTCAGGTCATGGCTGAGCTACCTAACTGGCCCAAAGAGATTACGGATAAGATGTACGTGGTGTACGGCAGGACTTCGGAGTATAACCTCCTGGGTGCGCCTTACAATCGCCTCGCCATCGACATGCCGGAACTCCTCCAGCCAGCCAACGCTGCGAAAGCGTGGGCAGGGTTCAACTACGATGCAATCTGCCGAACCACTAACCCATTCATGCGGGACCGGGACGGCAAGACCATCATCAACGGACGGCTCACCTTGAGCAACCTGACGTTATCCCTGAATAACTCCGGTGGCGTAGAGGGCTTCGTAGAGTTCAGCGGTCGGCGTAAGCAGACGGTTAACTTTGAAGGCCGTATCCTGACGCGAATCACCAACAAGGTAGGCCGTGTGCCTCTGGTGGATTACGGTGTCAAGCTGCCCGTGTTCCATGAAGTGCGTGAATGTCAGGTTGAGTTCAGAGCACTGACCTGGTTGCCGCTAACGGTATCCGGGATTGAATGGAAGGGGCAGTATTTCAACAACCTTCGGAGGGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3402a794b6dfcb22288418fc851103fcae563a116b338683aa9aacfd07d8b427
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8798
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of bacteriophage vB_YenP_ISAO8 which infects Yersinia enterocolitica O:8 Leon-Velarde,C.G., Kropinski,A.M. and Chen,S. 2014-10-28 — GenBank