Protein

View in Explore
Genbank accession
WAB57404.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,91
TF
Evidence RBPdetect2
Probability 0,76
Protein sequence
MANINKISMNLIWGVSGDITAPGPEKMNKGWEVEVVPRQWLNYLQNRLDTNVAYLLQKGLPEWDSETEYQANTSYVQRNGVVYKASRTNTNSEPGTTAGNTNWNRAFQEWSPALESLTSLTPTAWRFPFYNASGQATLGGITSYTVGLMGLSSDAAWRAKLKAQTSASQLTWLSNLTPVAGAIPYFNTATSMANLATTPFGRNWIGVADAATGRSQLQLGSAAVMTATAINQASTVVARDSTGTAAIGTVIGSLTGNASTATRLQTGRNINGVLFDGTQDITLPPLTADYAGIVARLHINGANMSGTDKTTQLALRNKSNTDWISLAVIEDNILQFAFRNTSNPIVQIGGEVVLHTGNQFSLGPTLSDARSRLGLDRVSQGSSDTVVFASTLNNGPYLTVQPSSVGGFNGGTQTWMFRFDETGTLTHGTVPVARVSGLANSAQIPAVTTAQSNSLVQRDSSGSFSAVGINAYGSIIGYGSNIFSRSSGTGNAHIGFQKADGSELGLIWGAPSNGSMNFRTLGGSTGMTLTGQDLTVVGRVNAATLNASGNVNATGNVSAGQAILNTAGNITGAAYGTYGSLTNWVDSVYAKKGEIPNDIARAGAAWDAVGQYILAGDRSGGSGGPGTIKAGSQLKPHSTISYTAGAVPAAGQYRCMGAFAGGGNQITLWQRIS
Physico‐chemical
properties
protein length:673 AA
molecular weight: 70127,15940 Da
isoelectric point:9,07987
aromaticity:0,07727
hydropathy:-0,13507

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WAB57404.1
1 673
Domain Start End Length (AA) Confidence
N-terminal 1 280 280 0,6335
Central domain 281 479 200 0,1350
C-terminal 480 673 193 0,9009
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-280
Central
281-479
C-terminal
480-673

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_PaeM_RP9
[NCBI] 		2951341 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WAB57404.1 [NCBI]
Genbank nucleotide accession
ON524865.1 [NCBI]
CDS location
range 16329 -> 18350
strand +
CDS
ATGGCCAATATCAACAAGATCAGTATGAACCTGATTTGGGGCGTCTCTGGTGATATCACCGCCCCAGGTCCGGAAAAGATGAACAAGGGCTGGGAGGTGGAGGTAGTCCCCCGGCAATGGTTGAACTACCTGCAAAACCGGTTGGACACCAACGTGGCCTACCTGCTCCAGAAAGGCCTGCCTGAGTGGGACAGTGAGACCGAGTATCAGGCAAACACCTCCTATGTACAACGCAACGGTGTAGTGTACAAGGCCTCTCGGACAAATACCAACAGTGAGCCTGGCACGACTGCGGGAAACACCAACTGGAACCGGGCTTTCCAAGAGTGGTCTCCAGCTCTGGAGTCCCTGACCTCGCTTACCCCCACTGCGTGGAGATTCCCGTTCTACAACGCTTCGGGACAAGCAACCCTGGGTGGCATCACCTCCTACACTGTAGGGCTCATGGGTCTTAGCTCCGATGCAGCCTGGCGGGCAAAGCTGAAAGCTCAAACGAGTGCTTCCCAGCTCACTTGGCTGTCCAACCTGACACCTGTGGCTGGAGCTATCCCGTATTTCAACACGGCTACCTCCATGGCCAACCTGGCAACGACCCCGTTTGGTCGAAACTGGATCGGCGTAGCAGATGCCGCAACGGGTAGGTCGCAGCTTCAACTCGGCAGCGCTGCTGTCATGACGGCCACTGCTATTAATCAGGCGAGCACAGTTGTTGCCAGGGATTCTACAGGAACTGCCGCCATCGGGACGGTGATTGGTAGCCTGACCGGTAACGCTTCAACTGCGACTCGACTGCAAACCGGGAGAAACATCAACGGTGTCCTTTTTGACGGAACCCAGGATATCACGCTCCCACCTCTGACAGCCGATTACGCAGGTATAGTGGCCCGCCTCCACATCAACGGGGCGAACATGTCAGGGACTGATAAAACAACCCAGTTGGCACTCCGAAACAAGTCTAACACGGATTGGATCAGTCTGGCTGTAATAGAAGATAACATCCTTCAGTTTGCTTTCCGAAACACTTCGAACCCCATCGTACAGATTGGGGGAGAAGTCGTTCTCCACACAGGGAACCAGTTCTCCCTTGGACCAACCCTAAGCGATGCCCGTAGTCGTCTAGGACTTGACCGAGTGTCCCAAGGGTCGTCCGATACCGTGGTATTCGCTAGCACGTTGAATAACGGTCCGTATTTGACCGTCCAACCTTCCTCTGTTGGAGGTTTTAATGGGGGAACGCAGACTTGGATGTTCCGATTCGATGAAACTGGGACACTGACCCACGGGACGGTACCAGTTGCAAGAGTGTCCGGCCTGGCAAACTCTGCTCAGATTCCTGCCGTAACTACTGCCCAGTCTAACTCCCTGGTTCAAAGGGATTCAAGCGGGAGCTTTAGTGCGGTAGGCATCAACGCCTACGGAAGCATTATCGGGTATGGATCGAACATTTTCAGCCGCTCCTCTGGTACAGGGAATGCCCACATCGGTTTCCAGAAGGCAGATGGGAGTGAGTTGGGCCTGATTTGGGGTGCTCCGTCCAACGGGTCCATGAACTTCCGGACTCTGGGTGGATCAACAGGCATGACGCTGACAGGTCAAGATTTGACTGTAGTTGGAAGGGTCAACGCAGCCACGCTGAACGCCTCTGGCAACGTGAATGCAACAGGGAACGTTAGCGCCGGCCAAGCTATTCTCAACACCGCAGGGAACATTACGGGAGCCGCTTACGGCACCTACGGCTCTCTTACCAACTGGGTGGATTCGGTATATGCCAAGAAGGGTGAGATTCCTAACGATATTGCCCGAGCTGGAGCAGCCTGGGACGCCGTAGGGCAGTACATCCTGGCAGGAGACCGGTCAGGCGGGTCGGGAGGCCCTGGCACCATCAAGGCAGGTAGCCAACTGAAACCGCACTCTACCATCAGTTACACCGCAGGGGCAGTTCCGGCAGCCGGGCAGTACCGTTGCATGGGAGCGTTTGCAGGGGGTGGTAACCAGATCACCCTGTGGCAACGCATTTCCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8f1498e0c40c11db9d43ec8597624e13970bae7516949456369ea33378167d09
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6386
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The phenotypic and genotypic characterization of efficient bacteriophages that are isolated in our laboratory against Pseudomonas Aeruginosa strains isolated from diabetic foot infections Salih,H., Bozdogan,B. and Basbulbul,G. 2011-12-28 — GenBank