Protein

View in Explore

Genbank accession

QBQ80950.1 [GenBank]

Protein name

hypothetical protein

RBP type

TSP

Evidence DepoScope

Probability 1,00

Evidence RBPdetect

Probability 0,82

Evidence RBPdetect2

Probability 0,95

Protein sequence

MSNSEQFALQASESAANAKKSELNAETSKNSAATDAASALLSKQESAASASSALQSKNAAAGSATSAQQALTAVQGLKAEVQQLKTDTQHIKEEGVAEVTALKNAATTSANNAKASETASANNATLADTKAKEASVSATTANQAKVAAEAAKAASEASAVESATSAGKSQTAANAAKASETVATQKAASASTSETNAAASAQTATNKAGESAASATAAKASETNAKTSETNAGTSAGRSESAALRSEAAAQRAEDIADAIGLEDATLTVKGIVRLSNDTNSTAENLAATPKAVKTVMDVANTKAPSNSPVLTGVPTAPTPAPEVNNNQIATTQFVHQIISALIGDAPDALNTLKELADALGDDPNFATTITTLINSKLAKDQNGADIPNKQLFIDNVGLRETVNLALGALKKNQNGADIPDKGVFLNNINAASKTDMAAKKGMRYTVVNAPAGVEAGKFYPVAIRRSSGFSSELASRVTISTGSRTGNHRLNNCEFNGFVMTGGWTDRGRYAYGMFHAYTANERAIHSILMSNKDDDLCSVFYVEGEAFPISVYVEEGLSVVAPSADYVVGQTTYKWGATDPGTECVAAETVLNFSNGRGFYSSHALLTNADISGNKIYANGEIVARGENQVRMIGGDYGALWRNDGAKTYLLFTAKGDQYGGWNDLRPFMIDNATGEFTIGTKLNAGQGVNGNASSATKLQTARKIGGASFDGTADVNLPGVNIQGNQNTTGNAATATKLQTARRIANVPFDGSGDISIPARNVNAFALGLTQIVQDPEDGNLSNGVPWNAITGVYRQQGIGASNIVAHFCDGGGSTPSLQIRAMYRNGGLWYRTSRDGYGFEENWDQIYTKKNPPPAGETLPVGVPLPWPTDTPPSGYIVMQGQPFDKAAYPKLAAAYPSGVLPDMRGQTIKGKPASGRDVLSTEADGVKSHTHTASTASVDLGSKTTSSFDYGTKGTSSFDYGTKTSNNTGAHTHGISGTANSAGGHQHHSSGPYANSSDSDLFPNGYTQVSVTNKPVVPRQGGAGMTRVSGKTSSDGAHTHSLSGSAASAGAHAHTVGIGAHTHSVGIGAHSHTVALGSHSHGVTVNATGNTENTVKNVAFNYIVRAA

Physico‐chemical properties

protein length:	1112 AA
molecular weight:	114402,35140 Da
isoelectric point:	6,40902
aromaticity:	0,05576
hydropathy:	-0,36178

Domains

Domains [InterPro]

DC_0465
STR
1–649

DC_0465 IPR022246 SSF88874 DC_0163

Coil
Unmapped
67–94

Coil IPR005068 IPR051934

IPR048390
ATT
610–672

IPR048390 IPR037053 SSF88874

DC_0163
STR
644–1034

DC_0163

IPR011083
ATT
866–913

IPR011083

QBQ80950.1

1 1112

Architecture

STR

ATT

STR

ATT

STR

STR 1-609 | ATT 610-672 | STR 673-861 | ATT 862-914 | STR 915-1112

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_0465	STR	DC_0465	1	649	Novel HMM	DC_0465	Central	Low	Positional only	20 proteins / 20 hits
Coil	Unmapped	-	67	94	Coils	Coil	-	-	-	-
IPR005068	STR	DC_0738	266	306	InterPro cluster	Bacteriophage lambda, Tail fiber protein, repeat-2	Central	High	Text match	217 proteins / 347 hits
IPR051934	Unmapped	-	533	1112	InterPro	Bacteriophage Tail Fiber Structural Protein	-	-	-	-
IPR048390	ATT	DC_0836	610	672	InterPro cluster	Long-tail fiber proximal subunit, trimerization domain	C-terminal	Medium	Text match	656 proteins / 656 hits
DC_0163	STR	DC_0163	644	1034	Novel HMM	DC_0163	Central	Low	Positional only	47 proteins / 47 hits
IPR022246	RBD	DC_0194	785	854	InterPro cluster	Bacteriophage T7, Gp17, C-terminal	C-terminal	Low	Positional only	166 proteins / 166 hits
SSF88874	STR	SSF88874	860	987	Merged direct domain	SSF88874	Central	Low	Positional only	109 proteins / 109 hits
IPR037053	ATT	IPR037053	862	914	Merged direct domain	Phage tail collar domain superfamily	N-terminal	Low	Positional only	37 proteins / 37 hits
IPR011083	ATT	DC_0235	866	913	InterPro cluster	Phage tail collar domain	C-terminal	Medium	Text match	1051 proteins / 1051 hits
DC_0163	STR	DC_0163	1026	1112	Novel HMM	DC_0163	Central	Low	Positional only	47 proteins / 47 hits
SSF88874	STR	SSF88874	1029	1111	Merged direct domain	SSF88874	Central	Low	Positional only	109 proteins / 109 hits

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout

N-terminal

Central

C-terminal

QBQ80950.1

1 1112

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	432	432	0,9220
Central domain	433	631	200	0,8500
C-terminal	632	1112	480	0,7725

Legend: N-terminal Central domain C-terminal

3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring

N-terminal
1-432

Central
433-631

C-terminal
632-1112

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Escherichia phage vB_EcoS_HdK1 [NCBI]	2508190	Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host	No host information

Coding sequence (CDS)

Genbank protein accession

QBQ80950.1 [NCBI]

Genbank nucleotide accession

MK373794 [NCBI]

CDS location

range 28213 -> 31551
strand +

CDS

GTGTCTAACTCTGAGCAATTTGCATTGCAGGCGTCTGAATCCGCTGCTAATGCTAAGAAGAGTGAGCTTAACGCAGAGACAAGTAAAAACTCTGCTGCAACGGATGCAGCGTCAGCTCTGCTGTCAAAACAGGAATCTGCTGCTAGTGCGTCTTCCGCATTGCAATCCAAGAACGCTGCGGCTGGTTCTGCTACATCAGCTCAACAAGCTCTTACTGCTGTGCAAGGACTCAAGGCTGAAGTCCAGCAATTAAAAACCGACACGCAGCATATTAAAGAAGAGGGTGTCGCTGAAGTAACAGCTCTCAAGAATGCTGCAACTACTTCGGCCAACAATGCTAAAGCATCAGAAACTGCATCTGCTAATAATGCGACTTTGGCTGATACTAAAGCAAAGGAAGCGTCTGTAAGTGCAACCACCGCTAATCAAGCGAAAGTAGCTGCTGAGGCAGCAAAGGCCGCATCCGAAGCAAGTGCAGTTGAGTCCGCTACTTCTGCCGGTAAATCGCAGACCGCAGCTAATGCAGCTAAGGCAAGTGAGACGGTTGCAACACAGAAGGCAGCTTCGGCGTCTACGTCTGAAACTAATGCGGCAGCTTCCGCTCAGACTGCGACTAACAAAGCTGGTGAGTCCGCCGCTAGTGCTACCGCAGCTAAGGCAAGCGAAACTAATGCTAAAACTTCAGAAACTAATGCTGGTACATCAGCTGGAAGATCTGAGTCTGCTGCTTTACGCTCAGAAGCTGCTGCCCAACGTGCGGAAGACATTGCTGATGCAATTGGTCTTGAAGATGCAACTTTAACTGTTAAAGGTATCGTTCGTCTTAGCAATGATACTAACAGCACTGCTGAAAACCTGGCAGCTACGCCAAAGGCTGTTAAAACAGTCATGGACGTTGCTAATACTAAAGCTCCGTCAAATAGTCCTGTTCTAACTGGCGTACCAACGGCACCAACTCCAGCACCTGAAGTTAATAACAATCAGATTGCCACAACTCAGTTTGTACACCAAATTATAAGCGCACTGATTGGTGATGCACCAGACGCGTTAAACACTCTGAAAGAGTTAGCTGACGCTCTTGGTGATGATCCGAATTTTGCAACGACGATAACCACACTTATTAACAGTAAGTTGGCTAAAGATCAAAATGGTGCTGACATTCCTAATAAGCAACTGTTCATTGATAACGTTGGTCTACGTGAGACTGTCAACTTAGCTCTCGGTGCATTGAAGAAGAACCAAAACGGTGCAGATATACCGGATAAAGGTGTCTTCCTTAATAACATCAATGCTGCCAGCAAGACGGATATGGCCGCCAAGAAAGGTATGAGATATACTGTGGTCAATGCCCCAGCGGGAGTTGAAGCAGGTAAGTTTTATCCTGTTGCGATTCGTCGTTCTTCTGGATTCAGCAGTGAATTAGCATCCAGGGTGACAATAAGTACAGGTTCAAGAACGGGAAACCATAGGTTGAACAACTGCGAGTTCAATGGTTTTGTTATGACTGGTGGTTGGACTGACAGGGGACGTTATGCTTATGGAATGTTCCACGCATATACTGCAAATGAACGTGCTATTCATTCCATTCTGATGAGTAATAAAGATGATGATCTGTGCTCTGTGTTCTATGTCGAAGGTGAAGCGTTCCCTATCTCTGTATATGTAGAAGAAGGTTTATCTGTTGTTGCACCATCTGCCGACTATGTTGTCGGACAAACGACTTACAAATGGGGTGCTACAGACCCTGGAACAGAATGCGTGGCCGCTGAAACTGTACTTAATTTCTCCAATGGTAGAGGATTCTATAGTTCGCACGCACTCCTCACAAATGCGGATATTAGTGGCAATAAAATTTACGCCAACGGTGAAATCGTAGCTCGCGGTGAGAATCAAGTTCGCATGATTGGTGGGGACTACGGTGCGTTATGGCGTAACGACGGTGCCAAGACCTATCTCTTATTTACCGCTAAAGGCGATCAATACGGTGGTTGGAACGATTTAAGACCATTTATGATTGATAACGCTACTGGTGAGTTTACCATCGGTACTAAATTGAACGCCGGTCAAGGTGTGAATGGTAACGCATCCAGTGCTACTAAGTTACAAACAGCGCGTAAAATTGGTGGCGCCTCATTTGATGGTACTGCTGACGTCAATCTTCCAGGCGTTAACATTCAGGGTAATCAGAACACAACTGGTAATGCGGCAACTGCCACCAAACTACAGACAGCACGTAGGATTGCCAATGTGCCTTTTGATGGTAGTGGCGATATATCGATTCCAGCTAGAAACGTGAATGCGTTTGCGTTAGGTTTGACTCAAATAGTACAAGATCCAGAAGATGGAAATCTATCTAATGGTGTACCTTGGAATGCTATAACCGGTGTTTACAGACAACAAGGTATAGGAGCCTCTAATATTGTTGCTCATTTTTGTGATGGTGGTGGTTCAACACCTTCTTTGCAGATAAGAGCTATGTATAGGAATGGTGGTCTTTGGTATCGTACATCACGTGATGGTTATGGTTTTGAAGAAAACTGGGATCAAATTTACACTAAAAAGAACCCGCCTCCGGCTGGCGAAACCTTACCTGTAGGTGTTCCATTACCGTGGCCCACGGATACACCTCCGTCCGGTTATATTGTAATGCAGGGTCAACCCTTCGATAAAGCTGCATACCCGAAACTTGCTGCTGCATACCCGTCGGGTGTACTTCCAGACATGCGTGGTCAAACTATCAAAGGTAAACCAGCAAGCGGTCGTGACGTACTTTCTACAGAAGCTGATGGTGTGAAATCACATACTCACACTGCGTCTACTGCATCTGTCGATCTTGGAAGCAAGACAACTTCTAGCTTTGATTATGGTACTAAAGGGACAAGTAGTTTCGACTACGGTACTAAGACGAGTAATAATACTGGTGCGCATACACATGGTATTAGCGGAACAGCAAATAGTGCAGGTGGGCACCAACACCATAGTTCTGGACCATATGCGAATTCTAGTGATAGTGATCTCTTTCCTAACGGTTATACCCAGGTTTCAGTCACAAACAAACCAGTTGTACCACGGCAAGGTGGCGCAGGTATGACCCGTGTATCAGGGAAGACATCATCAGATGGAGCACATACCCACTCGTTATCCGGTAGTGCCGCAAGCGCAGGTGCTCACGCACACACTGTTGGTATTGGTGCTCACACACACTCAGTCGGTATTGGTGCTCATAGTCATACAGTCGCTTTAGGTTCACACAGCCACGGTGTTACAGTTAACGCAACTGGTAACACGGAAAACACCGTTAAGAACGTTGCATTCAACTATATTGTGAGGGCTGCTTAA

Genome Context

Tertiary structure

PDB ID

69d9e087e6f4f439e6ab9578e664dadaca7d3afa808607a212cb4f4923fc7749

ColabFold

Source ColabFold

Method ColabFold

Resolution 0,3302

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Literature

Title	Authors	Date	PMID	Source
Still something new to discover - new insights into E. coli phage diversity and taxonomy	Korf,I.H.E., Adriaennsens,E., Dreiseikelmann,B., Kropinski,A., Nimtz,M., Meier-Kolthoff,J.P., Rohde,M., van Raaij,M. and Wittmann,J.	2019-05-17	—	GenBank

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

3D Structure with Domain Coloring

Domain Coloring

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence

Literature