Protein

View in Explore
Genbank accession
YP_004324470.1 [GenBank]
Protein name
virion structural protein
RBP type
TF
Evidence RBPdetect2
Probability 0,93
Protein sequence
MPAVNVAKSDTFEIQRQKINTIGSQIFSISAGGSDLSTGILKLGDGTKDAPSLAFTNDASLGFFKSNLGELAFVSTSKKVFGFDSSSQVAFQDFIVRKKSLETTGISISNTGAGYDEGTYTGVTFIGGTGSNGVVTIVVTGFVGTVTTEGDNYNPGAYNGVILEGGTGSGATFSFNVNATLGSITDGGSSLSPGIYANVPLTNVSSSGSGAEATVTVTGTTDLTIGITTSGSGLSDETYTDIPLLNTPDQTFVVTSIANPGTPPPDNVFSIDGTQQATLSVVEGRTYWFNTSDSSVETHPLGFRDSDENELPSTYFSVTQYGAAGNAGSFTQLVIKPGATNVVTGLTYYCASHAGMGGTINLTSVGGATNYGTDGLATVVVATNAVSTVTVTTGGSGYQQGDSLTFAGIQLGGDGAVLSGGVALTVSAATYNGVVTDVTVTDNGTGYEDGDVLTASTASIGGTGSSFQYTLSQDSGAISGVAISAYGSGYTSGDVLTLPGSLTASTTVALVDDEPVITVSNLASSGIQVGYTITGATGIPNGAVIQGVDTDTNTIAIDVDTTGTGTSNATYTPPWGAQTGATEFQYTIGNIGPVNSVTITDGGAGYDVSDVLTVSPSELSASINYAVTVGLVQTLTFSGTVADSAISVGDNLKVPDGAVTSVTPAGNAGTPDGSYTAIAATGGSGSGATFDVTRDGLGAIDSVTASDGGGGLGYTSGNTLTLAGALVGGADITLTVDEVTVSTLLPVYKVASTGGNIDSVTILAGGLAAAAVLQKDGTNNTYTVATATADSNGFFLNGDFTPEFTIYEGNAYVFDYTSIVEEYDFALSESPDGSNTTVTGITSVATLGSTTLTVSSTAGIIPGMGVSVTAGDGAFPIGTIVESINGSDITVSANPSLGGAVTLTFTGSSFLEGVTTVNGILTLNVNANTPDLYYFSPLNPGFGGNALLTFDANNPRVFGDGAEFTVTSVLTQDLIKGEVASGNLLAESATITTNLNAVNLAASESVTALTATLTTLNATNIQGSIISLSSSQTNINSIFNFGNGQLTIESATGDFTTAGELKTSGQLNVNDSLLVNSNVISAAAGLDIEFAPPVNQVAKVDASTAFGIASGSESDKPVTSYNGYIRFNTDSNQYEGYSESNSSWSSLGGVRDLDGNTTILAEETVGADDNTLWFIQDGTNTLKFTPNYVEFIGVKKLKSLNINAPAFEEWRANTSVDVGDYLKYGNDVYEVTGAGTTATSGNEPNDTSGNPFTNGSATLVYNTTAVAPITIEETSEFRIAPQGGTDFVVNGELRFSGNKFSSDVSDIEIAPNSGQKVFINATTSLVIPVGDNNSKGNPAQGAIRYNTDDTTFEGYDGVQWGSLGGVKDIDGDTLIKPESVPNADEDTLFFVNANSESMRLTTNELQFDSVSTITSTTSNSLNITAGTLFLGNNTDTTLDNTSSTSTFLHTSKEFFDIGLSVGLNVDPLLRLNDNGDILYNLGFGTASFSGVTLLDTDLRSFELAHTRQFTTKYSLTKGTINQGAAILYNPTTDEAAKVTITAHDINSTHKEILEFTVIDRGSDIFYTEIGNIKTGQEIISAEFDFNASGEVRVTTTLDSALINTNLINVTVVSQIIKK
Physico‐chemical
properties
protein length:1618 AA
molecular weight: 165520,93780 Da
isoelectric point:4,05003
aromaticity:0,07726
hydropathy:0,02756

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Prochlorococcus phage Syn1
[NCBI] 		444861 Uroviricota > Caudoviricetes > Pantevenvirales > Vellamovirus > Vellamovirus syn1
Host Synechococcus sp. WH 8101
[NCBI] 		59932 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_004324470.1 [NCBI]
Genbank nucleotide accession
NC_015288 [NCBI]
CDS location
range 87004 -> 91860
strand +
CDS
ATGCCAGCAGTTAACGTCGCTAAATCGGACACCTTTGAAATTCAAAGGCAAAAAATCAATACTATTGGATCGCAGATCTTTTCTATCTCCGCTGGTGGAAGTGACCTATCGACTGGTATTCTAAAGTTAGGTGATGGAACTAAAGATGCTCCGTCACTAGCATTTACTAATGATGCTTCTCTTGGTTTCTTCAAGTCGAATCTTGGAGAATTGGCATTTGTTTCCACTAGCAAAAAAGTTTTTGGATTTGACTCATCTAGTCAAGTTGCATTTCAAGATTTTATTGTCAGAAAGAAAAGTCTAGAAACTACTGGTATTTCGATCTCAAATACTGGTGCTGGGTATGATGAAGGAACTTATACAGGTGTAACTTTTATTGGTGGCACAGGTTCTAATGGAGTTGTCACTATTGTTGTAACTGGATTTGTAGGAACTGTTACTACAGAAGGTGATAATTATAATCCAGGAGCATATAATGGAGTCATTCTTGAAGGAGGAACAGGATCAGGAGCAACTTTCTCTTTTAATGTTAATGCTACCCTTGGTTCTATTACAGATGGAGGATCATCTTTATCACCAGGAATTTATGCAAATGTTCCTCTAACAAATGTTTCTAGTAGCGGATCTGGCGCAGAAGCAACCGTTACTGTTACTGGAACTACTGATTTAACAATTGGTATTACTACATCAGGATCTGGTTTAAGTGATGAAACTTACACAGATATTCCTCTACTCAATACTCCAGATCAGACATTTGTTGTAACATCTATTGCTAATCCTGGAACCCCTCCTCCAGACAACGTATTTTCAATTGACGGAACTCAGCAAGCAACACTTTCTGTTGTAGAAGGAAGAACATATTGGTTTAATACTAGTGATTCTAGTGTAGAGACTCATCCTCTTGGTTTTAGAGATAGCGATGAAAATGAGTTGCCATCTACTTACTTTTCTGTAACTCAGTATGGTGCTGCTGGTAATGCAGGATCTTTCACTCAATTGGTAATTAAACCAGGCGCAACAAATGTAGTTACAGGACTGACATACTATTGCGCTTCCCATGCAGGTATGGGCGGAACTATTAACTTGACTTCAGTTGGAGGTGCAACTAACTATGGAACTGATGGATTGGCAACTGTTGTAGTTGCTACGAATGCAGTTTCTACTGTCACTGTAACTACTGGTGGATCTGGATATCAGCAAGGAGATTCTTTGACCTTTGCTGGTATTCAACTTGGTGGTGACGGTGCTGTTCTATCTGGTGGTGTTGCTCTAACAGTTAGTGCTGCTACTTACAATGGTGTGGTAACTGATGTCACTGTTACTGACAATGGAACTGGATATGAGGATGGTGATGTTCTTACTGCCAGCACTGCATCCATTGGAGGAACAGGATCTAGTTTCCAATACACACTGTCTCAGGACTCAGGAGCAATTTCTGGTGTAGCTATAAGTGCATATGGTTCTGGATATACATCTGGAGATGTTTTGACACTTCCAGGTTCACTTACTGCAAGCACCACGGTTGCACTAGTAGATGATGAACCTGTAATTACTGTTTCAAACTTAGCATCTAGTGGAATTCAAGTTGGTTATACAATCACAGGTGCAACAGGAATTCCAAACGGAGCAGTTATTCAGGGAGTGGATACCGATACCAATACTATCGCAATTGATGTTGATACTACTGGAACTGGAACTAGTAACGCAACATATACTCCACCTTGGGGAGCACAAACTGGTGCAACTGAATTCCAATACACTATTGGAAATATCGGTCCAGTAAATTCAGTAACTATTACTGATGGTGGTGCGGGTTATGACGTTTCAGATGTTCTGACTGTTTCTCCATCTGAACTATCTGCAAGTATTAATTACGCAGTTACTGTTGGTCTTGTTCAAACACTAACATTTAGCGGAACCGTCGCTGATAGCGCAATTAGTGTAGGAGATAATCTAAAGGTTCCTGATGGTGCTGTCACTTCAGTTACTCCAGCTGGTAATGCAGGAACTCCTGATGGTTCATACACAGCTATTGCTGCTACTGGTGGATCTGGTAGTGGAGCAACATTTGATGTCACTAGAGATGGTCTTGGCGCTATCGATAGCGTAACTGCATCAGATGGTGGCGGTGGACTAGGATATACATCTGGTAATACCTTAACCCTTGCTGGTGCTTTGGTTGGTGGTGCTGATATTACTCTAACTGTTGATGAAGTAACTGTATCAACTCTGCTTCCTGTATATAAAGTAGCGTCAACTGGTGGAAATATTGACAGTGTTACTATTCTTGCTGGTGGTCTTGCTGCAGCTGCTGTTCTTCAAAAAGATGGAACCAACAATACATATACAGTTGCTACCGCTACTGCAGACTCGAATGGATTCTTTTTGAATGGAGACTTTACACCAGAGTTTACTATTTACGAAGGTAACGCATATGTCTTTGACTATACTTCTATTGTAGAAGAATATGACTTTGCTCTATCCGAATCTCCAGATGGATCTAATACTACAGTTACTGGTATTACTTCAGTTGCAACACTAGGAAGCACTACTCTTACAGTATCCAGCACAGCAGGTATTATTCCAGGAATGGGAGTTTCGGTTACTGCTGGTGATGGAGCATTCCCGATTGGAACAATAGTTGAGTCTATCAATGGAAGTGATATTACTGTATCTGCTAATCCATCACTAGGTGGTGCTGTAACACTAACATTCACTGGATCATCATTCCTAGAGGGCGTCACGACAGTCAATGGTATTTTGACTCTTAATGTAAATGCAAATACTCCAGATCTATATTACTTCTCACCACTCAACCCTGGATTTGGTGGCAATGCTCTTCTGACGTTTGACGCAAACAATCCAAGAGTATTCGGTGATGGAGCAGAATTTACAGTAACTAGTGTTCTCACTCAAGATCTAATCAAGGGAGAAGTAGCATCAGGGAATCTGCTAGCAGAAAGTGCAACTATTACTACTAATCTCAATGCTGTAAACCTTGCTGCATCAGAATCAGTAACTGCGTTAACAGCAACACTAACTACCCTGAACGCAACAAACATTCAAGGTAGTATTATTAGTTTGTCATCTTCACAGACTAATATCAATTCTATTTTTAACTTTGGAAATGGTCAACTGACAATTGAATCTGCAACTGGAGATTTTACAACTGCAGGAGAACTTAAAACATCTGGTCAACTGAATGTAAATGATTCTCTGCTTGTAAATTCAAATGTAATCAGTGCAGCTGCTGGTCTTGATATTGAATTTGCACCGCCAGTAAACCAAGTTGCAAAGGTTGATGCATCAACAGCATTTGGTATTGCTTCTGGTTCTGAATCAGATAAACCTGTTACTTCATACAATGGTTACATTAGATTTAATACTGATAGCAATCAGTATGAAGGTTATAGTGAATCAAATAGTTCTTGGTCTTCTCTTGGTGGTGTTCGTGACCTTGATGGAAACACGACTATTCTTGCTGAAGAAACTGTAGGTGCTGATGATAACACTCTATGGTTTATTCAAGATGGCACGAATACTCTCAAGTTTACTCCGAACTATGTTGAGTTTATTGGTGTCAAGAAACTAAAATCATTGAATATTAATGCTCCTGCTTTTGAAGAATGGAGAGCAAATACTAGTGTAGATGTTGGTGATTATCTGAAGTATGGTAACGATGTTTATGAAGTTACTGGAGCAGGAACGACAGCAACATCTGGAAACGAACCAAATGATACTAGTGGCAATCCATTTACTAATGGAAGTGCAACTCTTGTATATAACACAACTGCTGTTGCCCCAATTACCATTGAAGAAACTTCGGAATTTAGAATTGCTCCACAAGGTGGAACTGATTTTGTAGTTAATGGAGAACTAAGATTCTCTGGTAATAAATTCTCGTCAGATGTTTCTGATATTGAAATTGCACCTAACTCTGGTCAAAAGGTATTCATTAATGCAACAACATCTCTCGTAATTCCTGTTGGTGATAATAATTCTAAAGGAAATCCTGCTCAAGGTGCTATCAGATATAACACTGATGATACTACATTTGAAGGATACGATGGTGTTCAATGGGGTTCTCTGGGAGGAGTTAAGGATATTGATGGAGACACTCTAATCAAACCAGAGAGTGTTCCAAATGCTGATGAAGATACTCTATTTTTCGTCAATGCAAATTCTGAGTCTATGAGACTCACTACAAATGAACTACAATTTGATTCTGTAAGCACTATTACATCTACTACATCAAATAGTTTGAACATTACTGCAGGAACTTTGTTCCTAGGTAATAATACAGATACAACCCTAGACAATACTTCATCAACTTCAACTTTCCTACATACATCTAAAGAATTCTTTGACATTGGTCTATCTGTTGGTTTAAACGTAGATCCTTTGTTGAGACTAAATGATAATGGCGATATTCTTTATAACCTAGGATTCGGAACAGCATCATTTAGTGGAGTAACTTTATTAGATACAGATCTGAGATCATTTGAACTAGCACACACTAGACAGTTTACTACCAAATATAGTCTGACTAAAGGAACTATTAATCAAGGTGCAGCGATTCTATATAATCCAACTACTGATGAAGCTGCAAAAGTTACTATTACTGCACATGATATAAACAGCACACACAAAGAGATTCTTGAATTTACTGTTATAGATAGAGGATCTGACATCTTCTATACAGAAATTGGTAATATCAAAACTGGTCAAGAAATTATCAGTGCTGAGTTTGACTTTAACGCTAGCGGTGAGGTTCGCGTTACCACAACTCTAGATTCTGCTTTAATCAATACCAACTTAATCAATGTAACTGTGGTTTCGCAAATCATCAAAAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
029ea9028530d04d6a72237e0e763efa96e8b226b4f8aec8a9ac62a4c630126c
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7803
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage Syn1 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Erlich,R., Young,S.K., Koehrsen,M., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C., Galagan,J. and Birren,B. 2011-09-23 — GenBank