Protein

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Genbank accession
AXG66822.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MPRFRVRNLENNGWYDCADTPMFIRTKENTWQPLTVDTFSVRGLHGKRWYDIDAEFDPNYDDPCINQEIGNCGGAPTSTTKGSGTGDGSRGPKYDPLKGYPAGYDLPDAARTGFGVGIGNVPPTSRYITRPGIRTIESYDPTGLASQAGLGTWTNPNVPWASVHSRGAQITETIFAIPRQEGYVEITFASYHADGLSVDVYAEGIRVASTCGKVGGRGRIKFLNDPDAEDMRIMIRVRTSQGANWSLQVIPPKLNATTDRANLALDSQAAYDVLTYPDVIVPEYIGTPIFPAPCHATVWPIADRIVDSSAFEYYHYIGNNVGWTYLNYTSWDNLDYIEVYHAGRRIASTQEAQTGRGYLYFYYDPTGTQNFDLMVRVVAKDFGKNNSINSFYYSLYCPNERGAREYRFPCQYDWVVSAGHPTTEDNFALGTQTDIRAGLVDVRAGSFDTKFEVFDQEMNLLDTENLLAGQSGTLEFWKYPEHVLRSNITVRVTSGIGCDWSYFVWCPIQPPKLNVQDFSVPYNCLSVDDPNNPNNSIWTMSKGVLRYWGNVDHTVNLNFRIATVDGNRWTGAGRGSALTPAVASTGGYFQKTNETKHGDLWGNLEYEPWPLTIGNRSIVAVSTSFTWTGTIYTASLAQLPSAANGWVGVVTVYTPQDDEQYVDLRVNVTVTYG
Physico‐chemical
properties
protein length:673 AA
molecular weight: 74952,43350 Da
isoelectric point:5,06807
aromaticity:0,12630
hydropathy:-0,39406

Domains

Domains [InterPro]
DC_2160
ATT
1–267
DC_2160
DC_1307
STR
250–673
DC_1307
AXG66822.1
1 673
Architecture
ATT
STR
ATT 1-267 | STR 268-673
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Dickeya phage vB_DsoM_JA29
[NCBI] 		2283031 Uroviricota > Caudoviricetes > Salmondvirus >
Host Dickeya solani MK10
[NCBI] 		1224151 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Pectobacteriaceae > Dickeya > Dickeya solani

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AXG66822.1 [NCBI]
Genbank nucleotide accession
MH460461.1 [NCBI]
CDS location
range 62040 -> 64061
strand -
CDS
ATGCCTCGTTTTCGCGTAAGAAATTTAGAAAACAACGGCTGGTATGATTGCGCAGATACTCCGATGTTCATCCGAACAAAAGAAAATACGTGGCAACCATTAACAGTCGATACTTTTTCTGTTCGCGGTCTGCATGGAAAACGCTGGTACGATATTGATGCAGAGTTTGATCCTAACTATGACGATCCTTGTATCAATCAGGAAATCGGGAATTGTGGTGGCGCTCCAACTTCCACAACAAAAGGTTCCGGTACTGGCGACGGTTCGCGTGGCCCTAAATATGATCCGTTAAAAGGTTATCCTGCTGGATATGATTTACCGGATGCTGCGCGAACCGGTTTCGGTGTTGGAATTGGAAACGTTCCTCCTACGTCGCGTTATATTACTCGACCGGGAATAAGAACAATTGAAAGTTACGATCCGACTGGTCTTGCATCGCAAGCAGGTTTAGGAACGTGGACGAATCCAAATGTTCCGTGGGCGAGTGTTCATTCTCGCGGCGCACAAATCACTGAAACTATTTTCGCAATTCCTCGACAAGAAGGTTACGTTGAAATAACTTTTGCGTCGTATCACGCAGACGGTTTAAGTGTGGATGTTTACGCCGAAGGAATTCGCGTTGCATCTACGTGCGGAAAAGTTGGCGGTCGTGGTCGAATTAAATTCCTTAACGATCCTGATGCAGAAGATATGCGTATCATGATCCGTGTTCGTACTTCTCAAGGTGCGAACTGGAGTTTACAAGTCATACCGCCAAAACTCAATGCAACTACTGACCGCGCAAACTTAGCGCTGGATAGTCAGGCGGCATATGACGTTTTAACTTATCCGGATGTTATTGTTCCTGAATACATTGGCACACCAATTTTTCCTGCGCCGTGTCACGCAACTGTTTGGCCTATTGCAGATCGTATTGTTGATAGCAGCGCATTCGAATACTATCACTACATCGGCAACAACGTTGGTTGGACTTATCTTAACTATACGTCATGGGATAACTTAGATTACATCGAAGTTTATCATGCAGGCCGAAGAATTGCGTCAACACAAGAAGCACAAACTGGTCGCGGCTATCTTTATTTTTACTACGATCCTACAGGCACACAAAACTTTGATCTTATGGTTAGAGTTGTGGCGAAAGATTTTGGAAAAAATAATTCTATTAATAGCTTCTACTATTCTCTGTATTGTCCGAACGAAAGAGGCGCACGCGAATATCGCTTCCCTTGTCAGTATGATTGGGTAGTGAGCGCAGGGCATCCAACTACAGAAGATAACTTTGCATTAGGAACACAAACGGATATTCGCGCAGGCTTAGTTGATGTGCGTGCCGGAAGTTTCGATACGAAGTTTGAAGTTTTCGATCAGGAAATGAATCTGCTCGATACTGAAAATCTTTTGGCAGGACAATCAGGAACACTCGAATTCTGGAAGTATCCGGAACACGTTCTCCGTAGCAATATCACGGTGCGCGTAACGAGTGGTATCGGATGTGATTGGAGTTATTTTGTCTGGTGCCCAATTCAGCCTCCTAAACTTAATGTGCAAGATTTTTCTGTTCCTTATAACTGTCTCTCTGTTGATGATCCAAACAATCCTAATAACTCTATCTGGACGATGAGCAAAGGCGTTCTGCGTTATTGGGGTAACGTTGACCATACAGTGAATCTGAATTTCAGAATTGCAACTGTTGATGGAAACCGTTGGACAGGCGCAGGAAGAGGAAGCGCATTAACTCCTGCTGTTGCGTCAACTGGTGGATATTTCCAGAAAACAAACGAAACAAAACATGGTGACTTGTGGGGCAACTTGGAATATGAACCGTGGCCTTTAACAATCGGTAACAGAAGTATCGTTGCTGTTTCAACAAGTTTTACATGGACTGGTACGATCTACACTGCAAGTCTTGCGCAGTTGCCTAGCGCAGCTAATGGTTGGGTCGGCGTTGTTACTGTTTATACTCCACAGGATGATGAGCAATACGTTGATTTGCGAGTTAACGTAACAGTCACTTACGGGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
40cc87587b5d61d21048d27c063fbe46f318c2ae252bfc62421204e5073cfc8e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4114
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Jumbo Bacteriophages Are Represented Within an Increasing Diversity of Environmental Viruses Infecting the Emerging Phytopathogen, Dickeya solani Day,A.W., Ahn,J. and Salmond,G.P.C. 2018 — GenBank