Protein

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Genbank accession
URQ03109.1 [GenBank]
Protein name
long tail fiber distal subunit
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,71
TF
Evidence RBPdetect2
Probability 0,73
Protein sequence
MKLMAELRSTTAIGGNIVWHGGNLRFDPQGETVLYSGYKLYTENDKPDPHTDLTESVVKRAGDVMSGDLQIAKSTAQLHLSSTANTDASLYLTEDNGNHGVRYHYDGVVNQWQIIRRESNSESVVMYGSRSNNNVVINGIGYLNTTQRIFADNYHPNADKWTTARTLTLSGEVTGSVSIDGSSNVTINTVVPNHTTYAEVGLSASNPEYIATGRTLSGVDTTVDWDTLYRGGFYNKLSQGLNRPSGFTGYWYAQTMTYGSTTNATQVAYPYGISGNSGTIALRTRYADVWEDWVYMYHTDYHPEADKWTTARTLTLSGDVSGSVSFDGSSNISLAVTVADDSHTHDGRYYTEAESDARFVNATGDTMTGYLNVPTTQAQSSNVVYGFGGTSGGKIGSMQLSSGDIDDYQRSGFIDVNSSITGKPAEETGWMWGVHTEHNNGNGYAMTLAMGQNSNRLWWKRRESGVSSAWMKIFDDEYHPLADKWTTARTLTLNGDVSGSASIDGSSNVTLSVVVANDSHTHDGRYYTETEADARFAPIAGGGYVQKTGDTMSSSLIITDSAGNTAPASETVKVDKFGLIGNRTAVYLHNSNTAGEIVLGVGGILADNKQFSVKSTSITSTVNITAPTFIGALSGNATTATSATSATQATKWTTARTLTIGKTGKSVNGTANVSWSPQEVTGTNGAGQISFGTNNRVTTAEFISLLSAKGAFSTWYWTCRGSWSYAAQVTVDTGFGVFGTAGSVIEVHGTSTTNCTIKVITPTTASGATTRREFIYIDNGSNYAPGWRANYNSSYHPLADKWTTARTLTLNGDVSGSASIDGSANVALSVAVADDSHNHTHSDGSFTVNGTLISTGVSSYDKIRVWSSGSYTIGMASAQSFGWLNDYAMTFTMNNDTDRGFLWRDSSDAATDGAMSLTTNGNLMVKNVIALGGDTTRYMQRSSNEGSWVFRSDNGKTWHFGHRNTSWLHNSTDATSGFYYYQSIQSAGNITAYSDARVKTNVERITNPLEKIDRLNGYTYDRTDVECPRQTGVIAQEVLEVLPEAVVESGGDADGHYAVAYGNMVGLLIEGIKEEKRKREALEERIARLEALLS
Physico‐chemical
properties
protein length:1094 AA
molecular weight: 117986,87460 Da
isoelectric point:5,38529
aromaticity:0,09506
hydropathy:-0,39936

Domains

Domains [InterPro]
DC_1903
ATT
1–227
DC_1903 DC_1451 IPR030392
IPR005601
STR
61–190
IPR005601 cd19958 DC_0056
IPR030392
CHP
994–1046
IPR030392 Coil
URQ03109.1
1 1094
Architecture
ATT
STR
ATT
ATT 1-227 | STR 228-463 | ATT 464-1094
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
URQ03109.1
1 1094
Domain Start End Length (AA) Confidence
N-terminal 1 12 12 0,8523
Central domain 13 211 200 0,3397
C-terminal 212 1094 882 0,7354
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-12
Central
13-211
C-terminal
212-1094

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage PVA8
[NCBI] 		2938951 No lineage information
Host Vibrio sp.
[NCBI] 		678 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
URQ03109.1 [NCBI]
Genbank nucleotide accession
ON190024 [NCBI]
CDS location
range 62488 -> 65772
strand -
CDS
ATGAAACTAATGGCAGAATTACGTTCAACAACCGCGATTGGCGGTAACATAGTTTGGCATGGCGGTAATTTGCGTTTCGATCCGCAAGGAGAAACAGTACTTTACAGTGGCTACAAACTTTATACAGAAAATGACAAGCCAGACCCTCATACAGATTTAACCGAGTCTGTTGTTAAACGTGCTGGTGATGTCATGAGTGGCGATTTGCAAATCGCTAAATCGACTGCGCAATTGCATTTGAGCAGTACTGCAAACACCGATGCAAGTCTATACTTGACTGAGGACAACGGAAATCACGGGGTTCGTTATCACTATGATGGCGTTGTCAATCAATGGCAGATTATCAGACGTGAATCGAATTCTGAATCGGTTGTCATGTACGGTTCTAGATCAAACAACAACGTTGTTATCAACGGTATTGGTTATCTAAACACAACGCAGCGAATTTTTGCAGACAACTATCACCCAAATGCCGATAAATGGACGACTGCAAGAACGCTTACTCTATCAGGCGAAGTAACTGGTTCAGTTTCAATTGACGGTAGTTCAAACGTCACTATCAATACAGTTGTTCCAAATCATACAACATACGCTGAAGTTGGTCTGAGCGCAAGTAACCCTGAATATATCGCGACGGGGCGTACTCTATCGGGTGTTGATACCACAGTTGACTGGGATACTCTTTATCGAGGTGGCTTTTACAACAAGTTATCACAAGGTTTAAATCGACCTTCTGGGTTTACTGGTTACTGGTATGCTCAGACAATGACATATGGTTCGACTACTAACGCGACTCAAGTTGCTTACCCATATGGTATAAGCGGCAACTCAGGTACAATTGCACTTCGTACGAGATACGCAGACGTGTGGGAAGACTGGGTTTATATGTACCACACCGACTACCACCCAGAAGCTGATAAGTGGACAACTGCAAGAACGTTGACGTTATCTGGTGATGTTAGTGGATCAGTTTCGTTTGATGGTAGCTCGAATATTTCACTCGCAGTTACAGTTGCTGACGACTCTCATACTCACGATGGTCGTTACTACACCGAAGCAGAATCTGATGCTCGTTTCGTAAACGCGACTGGCGATACGATGACTGGTTACTTGAATGTACCTACTACACAAGCTCAGTCAAGTAACGTGGTTTACGGTTTTGGTGGAACATCTGGCGGCAAAATCGGCTCGATGCAGCTATCTTCTGGTGACATTGATGATTACCAACGAAGCGGTTTCATTGATGTAAATAGCTCAATCACGGGTAAGCCTGCTGAAGAAACTGGTTGGATGTGGGGTGTTCATACTGAGCACAACAACGGTAACGGTTATGCAATGACTCTTGCTATGGGTCAGAATAGTAATCGCCTATGGTGGAAGCGTCGAGAGTCTGGTGTTAGTTCAGCGTGGATGAAGATCTTCGATGATGAATATCACCCATTGGCTGATAAGTGGACAACTGCAAGAACATTGACTCTGAACGGCGATGTAAGTGGTTCTGCTTCAATCGACGGTAGCTCAAACGTTACCTTGTCTGTTGTGGTTGCTAATGACTCACATACGCACGATGGTCGATACTACACCGAGACTGAAGCAGACGCGAGATTCGCACCTATTGCGGGCGGCGGCTACGTACAGAAAACTGGTGATACGATGAGTTCATCATTGATCATCACTGACTCTGCTGGCAATACGGCTCCTGCATCTGAAACGGTTAAAGTTGATAAATTTGGATTGATTGGTAACCGCACTGCGGTGTATTTGCACAACTCAAACACGGCAGGTGAGATTGTTCTTGGCGTCGGTGGTATACTAGCTGACAATAAACAATTTTCAGTTAAGAGTACTTCAATTACATCGACTGTGAATATCACAGCACCGACATTCATCGGGGCATTGAGTGGTAACGCTACGACTGCAACATCTGCGACTTCAGCTACACAAGCGACGAAGTGGACGACTGCGAGAACGTTGACAATCGGGAAAACTGGCAAGTCTGTAAACGGTACAGCGAACGTATCATGGTCTCCTCAAGAGGTTACAGGCACTAACGGTGCAGGTCAAATTTCATTTGGGACAAATAATCGAGTAACGACTGCTGAATTTATTTCATTGCTGTCTGCAAAAGGCGCGTTTTCAACTTGGTACTGGACATGTCGTGGTAGTTGGTCATATGCTGCTCAGGTGACAGTAGACACGGGATTTGGTGTGTTTGGTACTGCGGGTTCTGTGATTGAAGTTCATGGTACTTCAACAACAAACTGCACAATCAAAGTTATTACACCGACAACTGCTTCTGGTGCGACAACTAGACGAGAATTCATTTACATTGATAATGGTTCTAATTATGCACCGGGATGGCGTGCTAACTACAACTCATCTTATCACCCGTTGGCAGATAAGTGGACTACGGCTCGTACTCTGACTCTGAACGGCGATGTAAGTGGTTCTGCTTCAATCGACGGTAGCGCAAACGTTGCATTATCTGTTGCGGTTGCGGATGATTCACACAATCATACTCATTCTGATGGGAGCTTCACAGTCAATGGGACATTGATCTCAACTGGTGTTTCTTCTTATGATAAGATTCGAGTGTGGTCTAGTGGTTCATATACAATCGGCATGGCAAGCGCACAATCCTTTGGTTGGTTGAATGACTACGCAATGACGTTCACAATGAACAACGATACGGATCGTGGATTCTTGTGGCGTGATTCGAGTGACGCAGCGACTGATGGGGCAATGTCATTAACGACAAACGGCAACTTGATGGTTAAGAACGTCATTGCATTGGGTGGCGATACTACACGATACATGCAGAGATCTTCAAATGAGGGTAGTTGGGTTTTCCGTTCTGATAATGGTAAAACGTGGCACTTTGGTCATCGAAACACAAGTTGGCTTCACAACTCAACTGATGCGACTAGCGGCTTCTACTACTATCAAAGCATTCAGTCGGCTGGTAATATTACAGCATACTCGGATGCGCGAGTCAAGACTAACGTTGAGCGAATCACAAATCCGCTTGAGAAAATTGACCGTCTGAATGGTTACACATATGATCGTACAGACGTTGAATGTCCGCGACAAACTGGTGTAATTGCTCAAGAAGTTCTTGAAGTTCTACCAGAAGCTGTTGTTGAATCCGGTGGCGATGCTGATGGTCACTATGCAGTTGCATACGGAAATATGGTTGGTCTATTGATTGAGGGTATTAAAGAAGAGAAGCGCAAACGCGAAGCTCTTGAAGAACGAATCGCTAGACTAGAAGCACTACTAAGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
bb1bfe8fa1112835d3c0a22ee7d206a226389468fe09d8b74c4539d21d705080
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5473
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of a broad-host-range bacteriophage that prevents Vibrio alginolyticus infections in juvenile turbots farming He,Z. 2023-05-12 — GenBank