Protein

View in Explore
Genbank accession
XAL80159.1 [GenBank]
Protein name
base plate tail tube protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,88
Protein sequence
MFYSLMRESKIVIEYDGRGYHFDALSNYDASTSFQEFKTLRRTIHNRTNYADSIINAQDPSSISLAINFSTTLIESNFFDWMGFTREGNSLFLPRNTPNIEPIMFNMYIINYNNSCIYFENCYVSTVDFSLDKSVPILNVGIESGKFSEVSTFRDGYTITQGEVLPYSPPAVYTNSAPLPALISASMSFQQQCSWREDRSIFDINKVYTNKRAYVNEMNASATLAFYYVKRLVGDKFLNLDPETRTPLIIKNKYVSITFPLARISKRLNFSDLYQVEYDVIPTADSDPVEINFFGERK
Physico‐chemical
properties
protein length:298 AA
molecular weight: 34317,31210 Da
isoelectric point:5,23427
aromaticity:0,14430
hydropathy:-0,25738

Domains

Domains [InterPro]
IPR056389
ATT
1–297
IPR056389
XAL80159.1
1 298
Architecture
ATT
ATT 1-297 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XAL80159.1
1 298
Domain Start End Length (AA) Confidence
N-terminal 1 11 11 0,9016
Central domain 12 210 200 0,0230
C-terminal 211 298 87 0,2076
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-11
Central
12-210
C-terminal
211-298

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SCF
[NCBI] 		3143147 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica
[NCBI] 		28901 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XAL80159.1 [NCBI]
Genbank nucleotide accession
PP735124 [NCBI]
CDS location
range 8852 -> 9748
strand +
CDS
ATGTTTTATTCTCTCATGCGAGAGTCTAAAATAGTTATTGAGTACGATGGTAGGGGGTATCATTTCGATGCCCTCTCTAACTATGATGCTAGTACGTCTTTTCAAGAGTTTAAGACTCTTAGACGTACTATCCATAATCGTACTAACTATGCAGACTCTATTATTAATGCTCAAGATCCTTCATCTATTTCATTGGCAATAAATTTCAGTACTACGCTTATTGAGTCTAATTTCTTTGATTGGATGGGATTCACGCGTGAGGGGAATTCTTTATTTTTGCCAAGAAATACTCCCAATATTGAACCTATTATGTTCAATATGTATATTATTAATTATAATAATAGCTGTATTTATTTCGAAAACTGTTATGTATCAACAGTTGATTTTTCTCTAGATAAGAGTGTACCAATTCTAAATGTTGGTATTGAGTCTGGAAAATTCTCTGAAGTATCTACTTTCCGTGATGGATATACAATTACACAAGGTGAAGTACTTCCGTATAGTCCCCCAGCTGTGTATACTAATAGCGCGCCGCTGCCGGCATTAATTTCAGCATCTATGTCCTTCCAACAACAATGTTCTTGGAGAGAAGATAGAAGTATATTTGATATAAACAAAGTTTATACTAATAAACGAGCTTATGTCAATGAAATGAATGCTTCCGCAACGCTAGCTTTCTATTATGTTAAGAGATTGGTAGGAGATAAGTTCTTGAATCTAGATCCTGAAACAAGAACTCCCCTAATTATTAAAAATAAATATGTTTCTATAACATTCCCTTTAGCACGTATTTCAAAACGCCTAAACTTCTCAGATTTGTATCAGGTAGAGTATGATGTAATACCTACTGCTGATTCAGATCCTGTAGAAATAAACTTCTTTGGAGAAAGAAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f4058eadb21ad96da33ed7c759ff1b5f5e4bd78f94096471cf412e819679f311
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7897
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of a lytic phage that eliminates Salmonella Enteritidis from contaminated fresh produce Dapuliga,C.C. and Schmidt,S. 2020-12 — GenBank