Protein

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Genbank accession
YP_010738488.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAYETGTATSVVDLLDKFRLFAEGQGWTTNRNVAAGTGREVCIQKGSAYFNFRAWNNETMLVNGTNTGSKYGITVNGSDGYSAGAGVHVQPGYPVRGSTSGGDQYVCLFPLVTTTGPFPAYHFFAPDAKTLYAEVEITTGAFMRFGCGSLDLFNPAAPGGGRFCYAVTGQHVTNSTATSNWLGADMDSSSYGLEFVPFRGADYSTNNSGYSCASMVRAAFGSFNNWAGSGRTVTTAGLNMACQGGGCHDKVLRDYSPNPMNGVGVLLPNIVSLNVGDEYLSPIGVIPGQRLMDMTNYAPGEEFTLGSDTWKVFPWYQKGGIGLNRGIAYKKVA
Physico‐chemical
properties
protein length:333 AA
molecular weight: 35408,17650 Da
isoelectric point:6,08401
aromaticity:0,12312
hydropathy:-0,15345

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010738488.1
1 333
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0606
Central domain 11 209 200 0,0037
C-terminal 210 333 123 0,9987
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-209
C-terminal
210-333

Taxonomy

  Name Taxonomy ID Lineage
Phage Stenotrophomonas phage vB_Sm_QDWS359
[NCBI] 		2943841 Uroviricota > Caudoviricetes > Mesyanzhinovviridae > Xooduovirus > Xooduovirus QDWS359
Host Stenotrophomonas maltophilia
[NCBI] 		40324 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Lysobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010738488.1 [NCBI]
Genbank nucleotide accession
NC_073028 [NCBI]
CDS location
range 7737 -> 8738
strand -
CDS
ATGGCATACGAGACCGGCACCGCGACCTCCGTCGTCGACCTCCTGGACAAGTTCCGCCTCTTCGCCGAGGGCCAGGGCTGGACCACCAATCGCAACGTCGCGGCTGGCACCGGCCGCGAGGTGTGCATCCAGAAGGGCTCCGCCTACTTCAACTTCCGTGCCTGGAACAATGAGACCATGCTGGTCAACGGCACGAACACTGGCAGCAAGTACGGCATCACCGTCAACGGGTCGGACGGGTACTCCGCCGGCGCCGGCGTGCATGTGCAGCCAGGCTACCCGGTGCGTGGCTCGACATCGGGTGGCGACCAGTACGTCTGCCTATTCCCGCTCGTGACGACCACCGGACCGTTCCCGGCCTACCACTTCTTCGCCCCGGACGCCAAGACGCTGTACGCTGAGGTGGAGATCACCACTGGCGCCTTCATGCGCTTCGGCTGCGGCTCCCTGGACCTGTTCAACCCCGCCGCCCCTGGCGGCGGCCGCTTCTGCTACGCCGTGACCGGCCAGCACGTGACGAACAGCACGGCGACGTCCAACTGGCTCGGCGCGGACATGGACAGCTCGAGCTACGGCCTGGAGTTCGTGCCCTTCCGCGGCGCGGACTACTCGACCAACAACTCAGGCTACTCCTGCGCCTCCATGGTACGCGCGGCCTTTGGCTCGTTCAACAACTGGGCGGGCTCGGGCCGCACCGTGACGACGGCAGGCCTCAACATGGCCTGCCAAGGCGGCGGCTGCCACGACAAGGTCCTGCGCGACTACAGCCCCAACCCGATGAACGGCGTCGGCGTCCTGCTCCCGAACATCGTGAGCCTGAACGTCGGCGACGAGTACCTGTCGCCGATCGGCGTCATCCCCGGCCAGCGCCTGATGGACATGACCAACTACGCGCCCGGCGAGGAGTTCACCCTGGGCTCTGACACCTGGAAGGTGTTCCCCTGGTACCAGAAGGGCGGCATCGGCCTGAACCGCGGCATCGCCTACAAGAAGGTGGCCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
b71a0dd505dd5b4493887b22b32b72572b2c5a40beb95ace61d54ba21a104a1c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6509
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50