Protein

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Genbank accession
AAC00550.1 [GenBank]
Protein name
minor structural protein gp89
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAKQYYILNGDLKRIGTLSLDGATVFTSDTITHQYASADQTNSSYGENPDAEDTTQKRSKNRKSKEYNHYGTIVVPQRQPDSSKVVEGNYIAKHDDVLDRWYIFRIWHTSETLLASGLAATSAELIDLGLWELSHTIVPAKTYTNCTAKTAFQWLAQKLTWNLDMSKLTTTLTMSKIEFDGTSRASSMLQTLLQDYDLECDFYVKATSNGTITDKIFEVGNKLNSEIYSGTVFVGQNVTGCTREITGNIVTKLYVFGPNGETMASANGGKTYIVDDAANRQYNPNWRTTYLEGAYTSNSTTDAHGLKAIAKTILADTNHPQYAYTVTVPHTMHPRLGSVVRTVNTDFTPEMVTKERVMAVTESYADPSQNSIQFGEFQTVTRITPAWLSNFTSQIANAVQKAMRDSSSIDPVVLTPDGVDFDKSNSAKRVIIQAYEGGTNISSFLDTKGFIFRQLSESGQYGAPTFGYLQNVTSLKLGEYRATIENQYFSTTPEVQADQTNARSLGRLSPTARGKDATEQYVVKLSDGSYLSSTAYPGAGLDGHGNDTLYQHWTSDGKLIDDMMVASGGHGSSFGVKEENGSIWIYGITKNFNSADERFRISKFRYHGGSDIKATVTSNSSDFTVGCGFSTDDPVRVSYDAKHDLIGVVRGDGSFEVLNPAQALAGDHDVLYRIDLTQYGFNLNTQTFQSACLDFPYVYWHSGDYDMHDYRMLYCANVVHQGKEFELNYDFSQSLPLKFDIVEPETIWMQPSGNLLATFNCHDPQDGENTAHTHAMFEIPVITRPEINLPKGAIPE
Physico‐chemical
properties
protein length:796 AA
molecular weight: 88324,02920 Da
isoelectric point:5,25723
aromaticity:0,10553
hydropathy:-0,43367

Domains

Domains [InterPro]
DC_0109
STR
1–768
DC_0109
IPR007119
Unmapped
57–375
IPR007119 IPR048799
IPR010572
ENZ
141–378
IPR010572
AAC00550.1
1 796
Architecture
STR
STR 1-768 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AAC00550.1
1 796
Domain Start End Length (AA) Confidence
N-terminal 1 510 510 0,9970
Central domain 511 785 276 0,1106
C-terminal 786 796 10 0,0807
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-510
Central
511-785
C-terminal
786-796

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactobacillus phage LL-H
[NCBI] 		12348 No lineage information
Host Lactobacillus delbrueckii subsp. lactis
[NCBI] 		29397 Bacteria > Firmicutes > Bacilli > Lactobacillales > Lactobacillaceae > Lactobacillus
Host Pseudomonas putida KT2440 and
[NCBI] 		1481724 Heterolobosea > Eutetramitea > Lyromonadida > Psalteriomonadidae > Monopylocystis >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AAC00550.1 [NCBI]
Genbank nucleotide accession
EF455602 [NCBI]
CDS location
range 16904 -> 19294
strand +
CDS
ATGGCTAAGCAATACTATATCTTAAATGGCGATTTAAAAAGAATCGGAACACTGTCCTTGGATGGTGCAACCGTCTTTACTTCTGACACGATCACTCACCAGTATGCGTCAGCTGACCAGACTAACAGCTCATATGGCGAAAACCCGGACGCAGAAGACACAACGCAAAAACGAAGTAAAAACCGGAAGTCCAAAGAATACAACCATTACGGCACGATCGTGGTCCCACAACGCCAGCCGGACAGCTCAAAGGTGGTGGAAGGTAACTACATCGCAAAGCATGACGACGTGTTAGATCGTTGGTACATCTTCCGCATCTGGCACACAAGCGAAACTCTGCTCGCTTCAGGGCTGGCCGCAACTTCAGCCGAGTTGATCGACCTGGGGCTCTGGGAGCTGTCTCACACGATAGTCCCTGCCAAGACCTACACCAATTGCACGGCAAAGACAGCCTTCCAGTGGCTAGCTCAAAAGCTGACTTGGAACCTGGACATGTCCAAACTGACCACTACGCTGACCATGTCAAAGATCGAATTTGACGGGACCAGCCGGGCTAGCTCCATGCTTCAAACTCTCCTCCAAGACTACGACCTGGAATGTGACTTTTACGTGAAAGCCACGTCGAACGGCACGATCACGGACAAGATTTTCGAGGTCGGTAACAAGCTCAACTCTGAAATCTACTCCGGAACGGTCTTCGTTGGTCAAAATGTTACCGGATGCACGCGTGAAATCACGGGAAACATCGTCACCAAACTCTATGTCTTCGGGCCAAACGGCGAAACAATGGCTTCCGCGAACGGCGGTAAAACCTATATCGTAGACGATGCGGCTAACCGCCAGTACAACCCAAATTGGCGGACGACCTATCTGGAAGGTGCCTACACCAGTAACTCAACGACCGATGCACATGGGCTTAAGGCAATCGCCAAAACAATTCTGGCTGATACTAATCACCCGCAATATGCGTACACGGTCACAGTCCCACACACGATGCATCCCCGGCTGGGGAGCGTAGTTCGGACGGTCAACACGGACTTTACACCAGAAATGGTGACGAAAGAGCGTGTCATGGCCGTGACCGAAAGCTATGCTGATCCGTCACAGAACTCAATCCAGTTTGGTGAGTTCCAGACCGTAACACGGATTACGCCAGCTTGGCTATCAAACTTTACCAGTCAGATTGCCAACGCAGTCCAAAAGGCCATGCGGGATAGCTCATCCATTGATCCGGTTGTCTTGACACCGGACGGGGTGGACTTCGACAAGTCAAACAGCGCCAAGCGTGTTATTATCCAAGCGTACGAAGGTGGAACCAATATTTCCTCCTTTTTGGACACAAAAGGGTTCATTTTTCGGCAGTTGTCAGAGTCGGGGCAATATGGGGCACCTACTTTTGGATACTTACAAAATGTAACCAGTTTAAAACTGGGCGAATATCGGGCTACGATCGAAAACCAGTACTTTTCGACTACTCCAGAAGTCCAAGCCGATCAAACAAATGCCCGATCACTGGGTAGGCTGTCACCTACAGCTCGCGGCAAAGATGCCACTGAGCAGTATGTGGTCAAATTATCCGACGGATCATATTTATCAAGCACCGCTTACCCAGGAGCAGGCCTGGACGGGCACGGAAATGACACACTTTACCAGCACTGGACCAGTGACGGCAAACTAATCGATGACATGATGGTGGCAAGTGGTGGCCACGGATCCAGCTTCGGGGTTAAAGAAGAGAACGGCAGTATTTGGATTTACGGCATAACCAAAAACTTTAACAGTGCCGATGAAAGGTTCAGAATTTCTAAATTTAGATACCACGGCGGTAGCGATATTAAGGCGACCGTCACGTCCAACAGCAGCGACTTCACCGTGGGGTGTGGCTTCTCGACTGATGATCCAGTCCGGGTTAGCTATGACGCAAAGCACGACTTGATAGGCGTGGTTAGAGGAGACGGAAGTTTTGAAGTTTTGAATCCTGCCCAAGCACTGGCAGGCGATCATGATGTCCTTTACCGGATTGATTTGACACAATATGGTTTTAATTTGAACACTCAGACCTTCCAATCCGCCTGTCTGGATTTCCCTTATGTTTACTGGCATTCTGGCGATTATGATATGCACGACTACCGGATGCTTTACTGCGCCAACGTGGTGCACCAGGGCAAAGAATTCGAACTAAATTACGACTTTTCGCAATCCTTGCCTTTGAAGTTCGATATAGTCGAACCAGAAACGATCTGGATGCAACCAAGCGGGAATTTACTAGCCACATTTAATTGCCATGACCCACAAGACGGGGAAAACACAGCTCATACGCACGCCATGTTTGAAATTCCGGTAATTACTAGACCAGAAATTAACTTGCCTAAGGGAGCAATTCCAGAATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
e8494a032386ad32bcd4594fdb0c78a08156518033b7a8b959bc5bc125289586
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7744
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genes and genome of Lactobacillus phage LL-H Mikkonen,M. 1996 — GenBank