Protein

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Genbank accession
UPW38310.1 [GenBank]
Protein name
receptor-blocking protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MGFFAGKYSDGKTVLSLNKVNGGDINAHKTPNANTIFHSDMPFVLVESTYESALSSAGNGFYVCQMPSVIANLKSNDPGRVILTAVEINGTHRAFLNGTQSQVGQFLAFFEDPPIGRAGAELGLTSAFASGNSLAHGTYTYNSSLGHEESIARQGTGGTISQASGFNLYRPGGAYAGEAIGRAWTLAGFPAGASKVSINSGNVDFWHPNWQAPIGAGKRGHNWFYVCNSNIRGYAGKKGTTPSNVSVLYNSSTYPDKVYVCRGSTSNLASQAAKKKYVQDSYNITPTKVIWYVLNLRYSNGGMSVASNPFTGSDIRISPSNFTIKGVSLPNTSYKFINQNAFGNLSSRPDMEYIGNNVAYTGVFGDTTARCEIVGSNKGSLWSPVSYGGSKSQISIYKFSAGKQWYVNSNNNTIGNEHGVVWGPSSVPLRLLPNNVASTYIGDDINPSYPGTGNKYVALSTVGLGLPNANSTVILTTEVVAGNLNTAGGPIRTYGGTAWQVQGRRQQSYTGGDGVFHQILTLPPNQLVPFHTTASYSYTQQWASRPDDLTFTRSGFIYTIKNLGNGNAELGVVIHANESAAVFLPRLRVTVQRLT
Physico‐chemical
properties
protein length:595 AA
molecular weight: 63612,13530 Da
isoelectric point:9,38345
aromaticity:0,10924
hydropathy:-0,24807

Domains

Domains [InterPro]
IPR059609
RBD
1–595
IPR059609
UPW38310.1
1 595
Architecture
RBD
RBD 1-595
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UPW38310.1
1 595
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0021
Central domain 11 209 200 0,0312
C-terminal 210 595 385 0,9856
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-209
C-terminal
210-595

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage vB_EcoS_ESCO30
[NCBI] 		2918879 Uroviricota > Caudoviricetes > Demerecviridae > Tequintavirus > Tequintavirus ESCO30
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UPW38310.1 [NCBI]
Genbank nucleotide accession
OM386657 [NCBI]
CDS location
range 11467 -> 13254
strand +
CDS
ATGGGTTTTTTCGCTGGAAAATATAGTGATGGTAAAACTGTATTATCGCTAAACAAAGTGAATGGTGGGGATATTAATGCCCACAAAACTCCTAATGCCAATACTATATTTCACTCTGATATGCCATTTGTTCTAGTTGAGAGTACTTATGAAAGTGCATTAAGTAGCGCTGGGAATGGTTTCTACGTATGCCAGATGCCTTCTGTGATAGCTAACCTAAAGAGTAATGATCCTGGTAGGGTTATACTAACCGCTGTTGAGATAAATGGTACGCATAGAGCTTTTCTTAATGGTACTCAATCCCAGGTTGGACAATTTCTTGCATTTTTTGAAGATCCCCCTATTGGTAGGGCGGGTGCTGAATTAGGTCTTACGTCAGCTTTTGCATCTGGTAACAGTTTAGCACATGGTACTTATACTTATAACTCTAGTCTAGGACATGAAGAGTCAATAGCTAGACAAGGTACTGGTGGTACTATATCACAGGCTTCTGGGTTTAACTTATACAGACCTGGCGGGGCATATGCCGGTGAAGCCATAGGTAGAGCGTGGACTTTAGCAGGATTTCCAGCCGGAGCATCTAAAGTATCAATAAATAGTGGTAATGTTGACTTCTGGCACCCTAATTGGCAGGCTCCTATAGGGGCGGGAAAAAGAGGTCATAATTGGTTTTATGTTTGTAACTCCAATATACGTGGATATGCTGGTAAAAAGGGTACTACGCCAAGTAATGTTAGTGTATTATATAATTCTTCAACCTATCCAGATAAGGTTTATGTATGTAGAGGCTCGACATCTAATTTAGCATCACAGGCAGCAAAGAAGAAGTATGTTCAAGATAGTTATAATATTACTCCGACCAAGGTTATTTGGTATGTGCTGAATCTTAGATACTCTAACGGTGGTATGAGCGTTGCTAGTAATCCTTTTACTGGGTCTGATATTCGTATAAGCCCCTCTAACTTTACTATAAAAGGTGTTAGTCTTCCAAATACTAGTTACAAATTCATTAATCAGAATGCCTTTGGTAACTTATCATCTAGACCTGATATGGAGTACATTGGTAATAACGTTGCTTATACCGGAGTCTTTGGAGACACTACAGCAAGATGCGAAATTGTAGGTTCTAATAAAGGCTCTTTATGGTCCCCTGTAAGTTACGGAGGTTCTAAGTCTCAGATAAGTATTTACAAATTCTCTGCTGGTAAACAATGGTATGTTAATTCCAATAATAATACTATAGGTAATGAGCATGGGGTTGTTTGGGGACCTTCTTCAGTACCGTTACGATTACTACCAAATAACGTAGCTAGTACTTACATAGGTGATGACATAAACCCTTCTTATCCAGGTACAGGGAATAAGTACGTAGCCCTATCTACAGTAGGTCTTGGATTACCTAATGCAAACTCTACAGTAATTCTAACTACTGAAGTAGTTGCCGGAAATCTTAATACAGCAGGAGGTCCTATACGAACATATGGTGGTACTGCGTGGCAGGTGCAAGGTAGAAGACAACAAAGTTATACCGGTGGTGATGGGGTATTCCATCAAATATTAACTTTACCCCCTAATCAGTTGGTGCCCTTCCATACTACAGCTTCTTATAGCTATACACAGCAGTGGGCTAGTCGACCTGATGATTTAACATTTACTAGAAGTGGATTTATTTACACTATTAAAAATCTGGGTAACGGTAATGCTGAGTTAGGTGTAGTTATACATGCAAATGAATCCGCTGCAGTTTTCTTACCGAGATTACGAGTAACAGTTCAACGCCTTACCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e82a552be803fc3fa25fddc6519cc44bab0f2a0cfc65c17cee9513e746753e4b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3162
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Avian Pathogenic Escherichia coli bacteriophages Nicolas,M., Trotereau,A. and Schouler,C. 2015-06 — GenBank