Protein

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Genbank accession
BFJ60527.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence RBPdetect
Probability 0,71
TF
Evidence RBPdetect2
Probability 0,82
Protein sequence
MIENTLPRKLVLGTIAPGYTKLYIPHSSYEDKDVVGKAFWIDGTRFIDTNIDVLYTIVDNLKDNTEYKIIEGSYYDAMVDSELLDNKLGINMSEASSAKTLEYPSIHNVIVGAQEVDIGVGDPIITMDIQGDAQSIRIDKKLSSEDDTHWQPCYSGAPDAVSFTTGQGTYDFRVIGFIYMPDGVTTESSPYSTIKNVKVENMFRPPSAPENINFKVAKIMDGIERYDLQVSWDWDKGTGSSVREFVLYFVETSEYNKTQWRKASKINSGAAKASVITSFPFNKEYKFKVAAIAWGPADQALTDSNTASFKITSSTPLDSSFANETGIEVTYDHIKAYRDLAGRKEQTFRLDAKTGSLAIGKLDDQGKAPISVDPLSGNVNVDGAVISKTMYSASFVLSNLSGKDNPSIRTASKTGYGQSAQGMWMGYTNNDQKFKFDLGDSTKFIRWDGEKLLISGKVQIGTPGGNVDIDQGIQGNFVANIYKDAATQPSAPSGKDYPPAGWSDTPITNPQDLVWISTAVIDSKSNKVASNSAWSTPIQFTAKAGEDGVATVLIYRASTNQPTTPTNKSIPPAGWLTEPPARSVGQSIWVCSAERKGAEPNITGNWSEPAKFSGDQGDQGIPGKDGSDGRTFYTWIKYADTVTGSGISNSPTGKRYIGIASNMASSTESNDPSDYTWALMKGDQGIPGTNGKDGKTTYTWIKYADDSSGRGFTDDPTGKAYLGIATNKSTQQESSNWRDYNWSKIKGEKGDTGVPGRNGKDGKTYYTWVRYADTAQGIGMSDSPDGKKYIGIAVNQLSPTESTNPNVYTWSKFEGDQGVPGRPGADGITYYTWIKYADSADGSGISNSPSGKEYIGFAYNKTSAVESSNPADYTWSRIKGDKGDKGDPGRDGIPGAPGKDGVTTYTWIRYADTATGGGMSNTSAGKKYIGIAVNKTTPTESSNPTDYSWSKLEGDQGVPGKPGKDGKTYYTWIKYADNASGSGMSNSPSGKKYIGFAYNKTTPTESSRPQDYVWSKFAGDDGRPGRDGQDGEDGKDGRPGRDGKDGRPGRDGRPGSDGNRGPGFYAQPISRFSRFNTTSATKFFTDTFGKGPVEYDVLTQFNPSNPASAETRQWIKSSWQEAAMLVHGNMIVNGSITAQKIIASNAFLQQIGVNVIYDNAAAQSSNPESRYKMKIDLSRGSIHIR
Physico‐chemical
properties
protein length:1185 AA
molecular weight: 128383,15740 Da
isoelectric point:5,71354
aromaticity:0,10295
hydropathy:-0,65367

Domains

Domains [InterPro]
IPR057550
STR
10–94
IPR057550 IPR057551 DC_1191 DC_1971 DC_1191
IPR057551
STR
102–190
IPR057551 IPR057552 IPR057549 DC_0558 IPR057549
IPR036116
STR
228–292
IPR036116 PTHR24637
BFJ60527.1
1 1185
Architecture
STR
STR
STR
ATT
STR
STR 10-94 | STR 100-550 | STR 577-679 | ATT 680-745 | STR 746-1185
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
BFJ60527.1
1 1185
Domain Start End Length (AA) Confidence
N-terminal 1 252 252 0,8023
Central domain 253 1119 868 0,0682
C-terminal 1120 1185 65 0,4346
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-252
Central
253-1119
C-terminal
1120-1185

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage VF16
[NCBI] 		3137795 Viruses >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
BFJ60527.1 [NCBI]
Genbank nucleotide accession
LC811684 [NCBI]
CDS location
range 90424 -> 93981
strand -
CDS
ATGATTGAGAATACACTACCAAGAAAACTAGTTCTAGGTACTATCGCTCCGGGATATACAAAACTGTATATCCCTCATTCTAGCTACGAGGACAAAGACGTAGTTGGTAAGGCATTTTGGATAGATGGGACTAGATTTATAGATACAAATATAGATGTTTTATATACTATAGTTGATAACTTAAAGGATAATACAGAATATAAAATCATCGAAGGGTCTTACTATGATGCTATGGTAGACTCAGAGCTTCTGGACAACAAGCTAGGTATTAATATGTCAGAAGCATCTTCAGCAAAAACGTTGGAATACCCTAGCATTCATAATGTTATAGTAGGAGCCCAAGAAGTAGATATTGGTGTTGGTGATCCTATTATAACTATGGATATACAAGGAGACGCTCAATCTATAAGAATAGATAAGAAGCTGTCTTCTGAGGACGATACTCACTGGCAACCTTGCTATAGTGGTGCTCCAGATGCGGTATCTTTTACTACAGGGCAAGGTACATACGACTTTAGGGTTATAGGTTTCATTTATATGCCTGATGGGGTTACTACAGAATCCTCACCTTATAGTACAATAAAAAATGTTAAAGTAGAGAACATGTTCCGCCCACCTAGTGCTCCAGAGAATATTAATTTTAAAGTAGCAAAAATAATGGATGGGATAGAACGTTACGACTTACAAGTAAGTTGGGACTGGGATAAGGGTACTGGCAGTTCTGTCAGAGAATTTGTTCTTTACTTTGTAGAGACTAGCGAGTATAATAAAACTCAATGGAGAAAGGCGAGCAAAATTAACAGTGGTGCTGCTAAAGCATCAGTAATTACAAGTTTTCCTTTTAATAAAGAATATAAATTTAAGGTAGCTGCTATAGCATGGGGGCCTGCTGACCAAGCACTAACCGACTCTAATACCGCATCCTTTAAAATTACAAGCTCAACCCCTCTAGACTCTTCTTTTGCTAATGAGACCGGCATAGAAGTTACTTATGACCATATCAAGGCATATAGAGACCTAGCGGGTAGAAAGGAGCAAACATTTAGATTAGATGCAAAAACGGGTTCATTAGCTATTGGTAAGTTAGATGACCAAGGTAAAGCGCCTATTTCTGTTGACCCTTTAAGTGGTAACGTCAACGTTGATGGTGCTGTAATATCTAAGACAATGTACTCAGCTTCTTTTGTATTATCTAATTTATCTGGTAAAGATAATCCTAGTATAAGAACAGCATCTAAGACAGGGTATGGACAATCTGCACAAGGTATGTGGATGGGTTACACTAATAATGACCAGAAGTTTAAGTTTGACCTAGGAGATTCCACCAAGTTCATTAGATGGGACGGGGAGAAGCTCCTTATATCTGGTAAAGTACAGATTGGTACACCAGGTGGTAACGTAGATATAGACCAAGGTATTCAAGGTAACTTCGTTGCTAATATATATAAAGATGCGGCTACACAACCTAGCGCCCCTTCAGGTAAAGATTATCCGCCAGCAGGTTGGAGCGACACTCCAATAACTAACCCACAGGACTTGGTATGGATTTCTACTGCTGTTATAGACTCGAAAAGTAACAAAGTAGCATCTAACAGTGCATGGTCTACTCCAATACAGTTTACTGCAAAAGCAGGTGAAGATGGCGTAGCTACAGTATTAATATATCGAGCTAGTACTAATCAACCTACTACTCCTACTAACAAATCAATACCTCCAGCGGGTTGGCTAACAGAGCCACCAGCTAGATCAGTTGGCCAATCTATCTGGGTATGTAGCGCAGAAAGAAAAGGTGCAGAACCTAACATAACAGGCAACTGGTCAGAGCCTGCTAAGTTTAGTGGAGATCAGGGTGATCAAGGTATCCCAGGTAAAGACGGCTCAGACGGGCGTACATTCTATACTTGGATTAAATACGCCGATACTGTAACAGGTTCGGGGATTAGTAACTCACCGACTGGAAAACGTTATATAGGTATTGCTAGTAATATGGCTAGTTCTACTGAAAGTAATGACCCTTCTGATTATACTTGGGCACTTATGAAAGGTGATCAAGGTATTCCAGGTACTAATGGTAAAGATGGTAAAACTACTTATACTTGGATCAAGTATGCTGATGATAGCTCAGGAAGAGGTTTTACAGATGATCCTACCGGTAAAGCTTACCTAGGTATAGCTACTAATAAGTCCACACAACAAGAAAGCTCTAACTGGCGCGACTATAATTGGAGCAAGATCAAGGGTGAGAAAGGTGATACTGGAGTTCCTGGTCGTAACGGTAAAGATGGTAAAACATATTATACTTGGGTACGGTACGCGGATACTGCTCAAGGTATAGGTATGTCAGATAGCCCTGACGGTAAGAAATATATCGGTATAGCTGTGAACCAACTATCACCAACAGAAAGTACTAACCCTAATGTGTATACATGGAGTAAGTTCGAAGGTGACCAAGGGGTTCCAGGACGTCCTGGGGCAGATGGAATTACTTACTACACTTGGATTAAGTATGCTGATAGTGCAGACGGAAGCGGTATCTCTAATAGCCCTAGCGGGAAAGAGTATATCGGATTCGCATATAATAAGACTTCTGCTGTAGAGAGTAGTAACCCTGCGGACTACACATGGAGTCGCATTAAGGGTGACAAAGGGGATAAGGGAGATCCTGGTCGTGATGGTATTCCTGGTGCTCCTGGTAAAGACGGTGTAACTACTTATACTTGGATTCGATACGCTGATACTGCTACAGGTGGTGGAATGTCTAATACTTCTGCTGGTAAGAAGTATATAGGTATTGCTGTGAATAAAACAACACCTACTGAAAGCAGTAATCCTACTGACTACTCTTGGAGTAAGTTAGAGGGTGATCAAGGTGTCCCTGGCAAGCCAGGTAAAGACGGTAAAACATATTATACTTGGATTAAGTATGCTGATAATGCTAGTGGTAGTGGTATGTCTAACAGCCCTAGCGGTAAGAAGTATATAGGTTTTGCATATAATAAAACAACACCTACAGAAAGTAGTAGACCTCAAGATTACGTATGGTCTAAGTTTGCAGGCGATGATGGACGCCCAGGTAGAGACGGACAAGATGGTGAAGATGGAAAAGACGGTCGTCCAGGTAGAGATGGTAAAGATGGTAGACCGGGTAGAGATGGTAGACCCGGTAGTGATGGTAATAGAGGCCCAGGCTTCTATGCTCAACCTATAAGTCGTTTTTCTAGATTTAATACTACATCTGCAACTAAGTTCTTTACCGATACATTTGGTAAAGGTCCAGTAGAGTATGATGTACTAACTCAATTTAATCCTAGCAATCCTGCCTCGGCAGAGACTCGTCAATGGATTAAAAGTAGCTGGCAAGAAGCCGCTATGTTAGTACACGGTAATATGATTGTTAATGGTTCTATTACTGCTCAGAAAATCATTGCTAGTAACGCCTTTTTACAACAAATAGGTGTTAATGTTATATATGATAATGCAGCAGCACAGTCATCGAATCCTGAATCTCGTTATAAAATGAAGATAGACTTGTCTCGCGGGTCTATACATATAAGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
daa38bdbed2e719edb925558d52c2f69b6f99b91c3955eeda652868e5d056b8f
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2835
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Combination of a novel bacteriophage and D-serine effectively controls Vibrio parahaemolyticus growth in seafood Miura,D., Yamaki,S., Tabuchi,I., Kawai,Y. and Yamazaki,K. 2024 — GenBank