Protein

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Genbank accession
WPJ70387.1 [GenBank]
Protein name
tail spike protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
TSP
Evidence UniProt/TrEMBL
Probability 1,00
Protein sequence
MANKPTQPLFPLGLETSESSNIKGFNNSGTIEHSPGAVMTFPEDTEVTGLPSSVRYNPDSDEFEGYYENGGWLSLGGGGIRWETLPHAPSSNLLEGRGYLINNTTGTSTVVLPSPTRIGDSVTICDAYGKFATYPLTVSPSGNNLYGSTEDMAITTDNVSATFTWSGPEQGWVITSGVGLGQGRVYSREIFTQILASETSAVTLNTPPTIVDVYADGKRLAESKYSLDGNVITFSPSLPASTELQVIEYTPIQLGNGGGSSSSTITWVYNGGSAIGGETEITLDVVVDDVPAIDINGSRQYKNLGFTFDPLTSKITLAQELDAEDEVVVIINGTPNIYNQIDYTLREVARVTNVKDTEVIYFSVGAVLSGYKVIYDKVTQRSYFIPELPTGTTAVSLSSSAVLVHSAGSVDLGALAVSREEYVTLSGTFDSGAVINVKNELLTHTDGKYRWDGTLPKTVAAGTTPETSGGIGIGSWVSVGDAALRSDLATGGKASLVGYNDSDVAAELDSLNSINAVYVGAKSTSSKPLDYSGEEHFLPILASGTQLENYVFKSPVIADFKSASDTIPPASGVMFKMGVSGLSTGPYFSQDNYHLRNLTVVGGTPEVVTFEPYTGLTAVLDNLRIINNGDPDKAAINFKGQNWWPTVSNCIFKDYTDKKGNFCKAIDDGGDPSIRRSGNSRLLFTGNKVNFGGAFLGGTMLKASAVFNLIKDNACEHGENAVVLEYPSAYTVIDGLYTECYFGGGSQIVIGDKEPDPAIPKMDMVGITIKNVYFNNHSQSSNKLIKSGNETVRIDRLTLDNIIVTNANVTSPLIELIDVPAQSIYVGNITSGVALINKTDNAVKIIDLNNNFIKSLNGNLSSTGADSATVNNSRAKVFGNFFIQSTGSLTINRYASGNQYQKNRESKNYAAMTITTGTACGLEWQNPKYSEISGATATVQFLAKASATVSAIVLVKYKNSAGGSTLASSLININGGDFQEFTIPFFAARNDNDDSVLSIDIRFENTPSSIDFYACAFRLNRGDTGLCRAANDYTSGEVDAEIAKFTFY
Physico‐chemical
properties
protein length:1048 AA
molecular weight: 111811,18600 Da
isoelectric point:4,68873
aromaticity:0,09065
hydropathy:-0,13302

Domains

Domains [InterPro]
DC_1946
ATT
1–995
DC_1946
G3DSA:3.30.2020.50
ATT
335–420
G3DSA:3.30.2020.50 G3DSA:2.10.10.80 IPR011050
IPR040775
RBD
416–481
IPR040775
WPJ70387.1
1 1048
Architecture
ATT
ATT 1-995 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WPJ70387.1
1 1048
Domain Start End Length (AA) Confidence
N-terminal 1 504 504 0,9964
Central domain 505 867 364 0,9831
C-terminal 868 1048 180 0,9825
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-504
Central
505-867
C-terminal
868-1048

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage RA148
[NCBI] 		3075145 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WPJ70387.1 [NCBI]
Genbank nucleotide accession
OR242317.1 [NCBI]
CDS location
range 4450 -> 7596
strand -
CDS
ATGGCCAACAAACCAACACAGCCTCTTTTCCCTTTGGGTTTAGAAACTTCTGAGTCTTCGAACATAAAAGGCTTCAACAACTCCGGCACTATTGAGCATTCCCCTGGTGCCGTAATGACATTTCCTGAAGATACTGAAGTTACAGGTCTTCCATCTTCTGTACGTTACAATCCTGATAGCGATGAATTTGAAGGTTATTACGAAAACGGTGGTTGGCTGTCTTTGGGGGGCGGTGGAATACGCTGGGAAACGCTCCCTCACGCTCCCTCTAGCAATTTGTTAGAAGGTCGTGGCTATCTCATTAATAATACCACAGGGACATCTACAGTGGTTCTCCCTTCCCCTACGCGTATTGGGGATTCCGTTACTATTTGTGATGCTTATGGGAAATTTGCCACTTACCCATTGACCGTGTCTCCTTCTGGAAATAATTTGTATGGCTCCACTGAAGACATGGCTATAACAACTGATAACGTATCAGCAACGTTCACTTGGTCTGGACCTGAACAAGGTTGGGTTATTACATCCGGCGTCGGTCTTGGCCAAGGCCGTGTCTACAGTCGTGAAATCTTTACACAAATTTTGGCGTCTGAAACAAGTGCTGTCACTCTCAATACTCCACCAACAATCGTGGACGTGTATGCTGACGGAAAACGTCTTGCGGAATCCAAATATTCACTAGATGGGAATGTAATCACTTTCAGTCCTTCTTTGCCAGCCAGCACAGAACTTCAGGTGATTGAATATACTCCTATTCAATTGGGTAATGGCGGTGGTTCTAGTTCTTCTACGATTACTTGGGTCTATAATGGGGGTTCAGCGATTGGCGGTGAAACCGAAATCACGTTGGACGTCGTTGTTGATGATGTTCCGGCCATTGATATAAACGGAAGTCGCCAGTATAAAAATCTGGGGTTCACATTCGATCCATTAACCAGTAAAATCACTCTTGCGCAAGAACTGGATGCGGAGGATGAAGTTGTTGTAATTATCAATGGAACGCCAAACATCTATAATCAAATTGATTATACTTTGCGGGAAGTGGCTCGTGTAACCAATGTTAAAGATACAGAGGTCATTTATTTTAGTGTTGGTGCTGTGTTAAGTGGATATAAAGTTATCTATGATAAAGTAACACAGAGATCATATTTTATTCCAGAGCTACCGACTGGAACCACGGCAGTCAGCCTTAGTTCTTCGGCTGTACTTGTGCATTCTGCTGGTAGTGTTGATCTGGGCGCATTAGCTGTATCTCGTGAAGAATACGTAACATTGTCTGGGACATTTGATTCTGGTGCTGTCATCAATGTTAAAAATGAATTACTCACTCACACGGATGGAAAGTATCGTTGGGATGGTACACTTCCTAAAACTGTAGCTGCTGGAACAACACCTGAAACATCTGGGGGTATTGGGATTGGATCGTGGGTTAGTGTTGGTGATGCCGCGCTTAGAAGCGATTTAGCTACAGGTGGTAAGGCATCTTTAGTTGGATACAACGATAGCGATGTTGCAGCTGAACTCGACAGTTTAAATTCCATAAATGCGGTGTATGTAGGTGCTAAATCTACCTCTAGTAAACCGTTAGACTATTCTGGCGAGGAGCACTTTCTTCCGATTCTTGCGTCTGGTACTCAACTAGAAAACTACGTCTTTAAGTCACCAGTAATAGCAGATTTTAAATCGGCATCGGATACGATACCACCAGCATCGGGTGTCATGTTCAAAATGGGTGTAAGTGGTCTTTCAACTGGCCCGTATTTTTCGCAGGACAATTACCATCTACGAAATCTAACTGTGGTTGGGGGGACTCCTGAGGTTGTAACATTTGAGCCATACACAGGACTGACTGCGGTTTTAGATAACTTACGCATTATTAATAATGGTGACCCAGACAAGGCTGCTATCAACTTTAAAGGCCAAAACTGGTGGCCTACAGTTTCTAACTGTATTTTCAAAGATTATACTGATAAGAAAGGAAATTTCTGCAAAGCGATTGATGATGGAGGAGATCCTTCTATAAGAAGGAGTGGCAACAGTAGGTTGCTTTTTACTGGCAATAAGGTCAACTTCGGCGGTGCGTTTCTTGGTGGCACGATGCTGAAAGCTAGCGCTGTCTTTAATCTGATAAAAGACAATGCCTGTGAGCACGGAGAGAACGCAGTTGTGCTTGAATATCCATCAGCATACACCGTGATTGATGGGCTTTATACTGAATGCTATTTTGGTGGCGGCAGCCAGATAGTAATTGGCGATAAAGAACCAGACCCTGCTATTCCAAAAATGGATATGGTTGGAATAACCATTAAGAATGTTTACTTTAATAATCATTCACAATCATCGAATAAGCTAATCAAATCTGGGAATGAAACCGTAAGAATAGACCGGTTAACTCTTGACAATATAATTGTCACAAATGCAAATGTTACATCGCCACTTATCGAACTGATTGATGTTCCCGCTCAGTCTATCTATGTAGGTAACATCACATCTGGCGTCGCACTAATCAATAAAACGGATAACGCTGTAAAAATAATAGATTTGAATAATAATTTTATTAAATCGCTAAATGGAAATTTATCATCTACTGGAGCGGACTCTGCAACAGTAAATAACTCTAGGGCTAAAGTTTTTGGTAATTTCTTCATCCAATCAACAGGATCCTTAACAATAAATAGGTACGCAAGCGGGAATCAATATCAAAAAAATAGAGAGTCAAAAAACTACGCCGCCATGACCATTACCACGGGAACTGCATGTGGTCTGGAGTGGCAGAATCCAAAATACTCAGAAATATCTGGAGCTACAGCAACAGTTCAGTTTCTCGCCAAAGCAAGTGCTACGGTGAGTGCAATTGTTTTAGTTAAATATAAGAACAGCGCAGGAGGTAGCACACTTGCGTCATCATTAATCAATATTAATGGTGGAGATTTCCAAGAGTTTACTATTCCTTTTTTTGCTGCTCGAAATGACAATGATGATTCTGTGCTTTCTATTGACATCAGATTTGAAAACACACCATCTAGCATTGATTTTTATGCATGCGCTTTCAGATTAAACAGAGGTGATACGGGGCTATGCAGGGCAGCTAACGACTATACATCAGGGGAAGTTGATGCTGAGATAGCTAAATTCACATTTTACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
7eed331dda5d25ee332a506ce48c71c876029c9284b348f875cd2ce743424a8c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6359
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bacteriophages to control Salmonella in UK pigs Clokie,M., Atterbury,R., Gigante,A., Thanki,A. and Hooton,S. 2021-11-10 — GenBank