Protein

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Genbank accession
AUS02992.1 [GenBank]
Protein name
pectin lyase fold protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MTTKVNNRMIDGAAVNVLDFGADPKGVSDSTTAFQSAIDSINGGKLIVPEGTYYISSTIQLRHKNITIVGYGHEYSIINNTNDTEYAFDLFPVAAQTGTVGVESLGIVSKFGIKTRYDHSTDWENNSNPIKNIRIRDCKFTGKYDDISDSDAGTPAVTDVSVLDNYGVGLQLSVTYRSDIRNNEFYRYGVGINDSGNTLGIICQNRFLKCARHIHSQRTLWAGSSFGLGAEMVIEQNDFLDATHGGGVSMFNTFGCNFRNNYMEHLDRSGSDSSPVLMYSQNASH
Physico‐chemical
properties
protein length:285 AA
molecular weight: 31282,27530 Da
isoelectric point:5,42422
aromaticity:0,09825
hydropathy:-0,34667

Domains

Domains [InterPro]
IPR011050
STR
13–267
IPR011050
IPR012334
STR
14–283
IPR012334
IPR024535
ENZ
15–211
IPR024535
AUS02992.1
1 285
Architecture
STR
STR 13-283 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AUS02992.1
1 285
Domain Start End Length (AA) Confidence
N-terminal 1 25 25 0,9029
Central domain 26 274 250 0,9922
C-terminal 275 285 10 0,2549
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-25
Central
26-274
C-terminal
275-285

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage 2.275.O._10N.286.54.E11
[NCBI] 		1881285 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio cyclitrophicus
[NCBI] 		47951 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AUS02992.1 [NCBI]
Genbank nucleotide accession
MG592671 [NCBI]
CDS location
range 258474 -> 259331
strand -
CDS
ATGACTACTAAAGTAAATAATCGAATGATTGATGGAGCTGCTGTCAATGTTTTAGATTTCGGTGCTGATCCTAAAGGAGTATCTGATAGCACTACAGCTTTTCAATCAGCAATTGATTCCATTAATGGGGGTAAGTTGATTGTGCCGGAGGGGACCTATTACATCAGCTCTACTATACAACTTCGCCATAAAAACATTACTATTGTAGGGTATGGTCACGAGTATTCAATCATCAACAACACAAACGATACTGAATACGCTTTTGATCTGTTTCCTGTCGCGGCGCAGACAGGTACAGTTGGGGTCGAGTCTCTTGGAATCGTTTCGAAATTCGGCATCAAGACTCGTTACGACCACAGCACAGATTGGGAAAATAACTCCAACCCTATTAAAAACATTCGAATACGAGACTGTAAGTTCACAGGCAAATATGATGATATTTCAGATTCAGATGCAGGCACACCTGCAGTTACCGATGTCTCTGTTTTAGATAATTACGGGGTTGGTTTGCAACTATCAGTTACCTATCGATCAGATATACGCAATAACGAGTTTTACAGATATGGTGTTGGAATCAATGACTCAGGAAACACTCTAGGGATCATCTGTCAGAATCGTTTCCTTAAATGCGCTAGGCATATACATAGCCAAAGAACACTTTGGGCTGGAAGTTCATTTGGTTTAGGCGCGGAAATGGTTATAGAACAGAATGATTTTCTTGATGCTACTCATGGCGGCGGTGTGTCTATGTTCAATACATTCGGGTGCAATTTTAGAAATAACTACATGGAACACCTAGATCGCTCAGGATCTGATTCAAGCCCTGTGTTAATGTATTCACAAAACGCGTCTCATTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
957f773b2eab412b3f7ac2ac70cd0dd8fe74b216ff9f7e213b58849ef75e9a98
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8413
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A major lineage of nontailed dsDNA viruses as unrecognized killers of marine bacteria Kauffman,K.M., Hussain,F.A., Yang,J., Arevalo,P., Brown,J.M., Chang,W.K., VanInsberghe,D., Elsherbini,J., Cutler,M.B., Kelly,L. and Polz,M.F. 2018-01-24 — GenBank