Protein

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Genbank accession
YP_010670304.1 [GenBank]
Protein name
baseplate wedge subunit
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MATPIRIKRSAVPGKIPAQGVLQYGELAYNLNDAELFAVRNRVGIGSEVVRVAAGATVTNIIYVTKDGSDTNTGLKLGDAKATIKGAVAISTTGSVIKISAGTYVENNPIVLPPQVSVVGDSLREVTVTPQNTGDLFYVSNGNYIAEMSFVGAANTGAIFAFNPNKVEYFNQSPYIQNCTNFIPNSIGMKIDGNHALGLTKSMVLDSYTQYNAAGVGVSITNEGYAQLVSLFTICPNIAVYCASGGACDLTNSNSSFGNYGLIADGRGTKKYNGITSNSYDVNEDTFEIAFNTPTFNVTNAVYDNTTGIVTITTNQENGFEVGMGVSISGLTFSCPSGPGIVTYPSGNNGYVFNVKTTPTTYQFSAYVGTSTLPHTYNSGGTVKLNLIRPYDGEVIYFDLLYYTVGKVVVGSGGTGYTTTPTITISDPSTSGTWGVPAQAVAEIRNGTITNIELVSSGRGYTSVPTVTISSPDVGINTATATVQLIPTYYTIQSSTPISAGICTITINENVPYAVGAGASVPFFKQSRILASGHAFEYIGSGTDITTALPSAGGVPIQDNEVDMRNGGLVVYTSTDQAGNFRIGDGVAINQTTGTISGTFYSKSLFSTLTPFILALGGD
Physico‐chemical
properties
protein length:619 AA
molecular weight: 64719,60980 Da
isoelectric point:4,87533
aromaticity:0,09370
hydropathy:0,06963

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010670304.1
1 619
Domain Start End Length (AA) Confidence
N-terminal 1 115 115 0,9560
Central domain 116 341 227 0,9872
C-terminal 342 619 277 0,2394
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-115
Central
116-341
C-terminal
342-619

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-SRM01
[NCBI] 		2781608 Uroviricota > Caudoviricetes > Pantevenvirales > Serangoonvirus > Serangoonvirus essarone
Host Synechococcus sp.
[NCBI] 		1131 cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010670304.1 [NCBI]
Genbank nucleotide accession
NC_070963 [NCBI]
CDS location
range 212414 -> 214273
strand +
CDS
ATGGCAACTCCGATTAGAATTAAACGCTCTGCTGTGCCTGGAAAAATACCAGCACAAGGAGTATTACAATATGGCGAATTAGCTTATAATCTCAATGATGCTGAACTCTTTGCTGTCAGAAATAGAGTCGGTATTGGATCGGAAGTTGTTAGAGTTGCTGCGGGTGCAACAGTTACAAATATCATCTATGTCACAAAAGACGGAAGCGACACAAACACAGGACTCAAACTCGGAGACGCAAAAGCAACCATTAAAGGAGCAGTCGCAATCTCAACAACAGGATCTGTTATTAAGATTTCTGCTGGAACTTATGTAGAAAATAATCCGATTGTTCTTCCTCCTCAAGTCAGTGTTGTTGGAGACAGTTTAAGAGAAGTTACAGTCACTCCACAAAACACTGGAGATCTCTTTTACGTTTCAAATGGTAACTACATTGCCGAAATGTCATTTGTTGGGGCGGCAAATACTGGAGCAATTTTTGCATTTAATCCGAATAAAGTAGAATACTTTAATCAATCTCCATACATTCAAAATTGTACTAATTTTATTCCAAATAGCATTGGAATGAAAATTGATGGAAATCACGCTCTTGGTTTAACTAAATCAATGGTGCTTGATTCATATACTCAATATAATGCTGCTGGTGTAGGTGTATCAATTACAAATGAAGGATATGCTCAATTAGTTTCTCTCTTTACAATTTGTCCAAATATTGCAGTTTATTGTGCGAGTGGTGGTGCTTGCGATTTAACGAACTCAAACTCTTCATTTGGGAATTATGGATTAATTGCCGATGGAAGAGGTACTAAAAAATATAATGGTATTACCTCAAATAGTTATGATGTAAATGAAGATACATTTGAGATTGCTTTTAATACTCCAACATTTAATGTTACAAATGCTGTTTATGATAACACGACTGGAATCGTAACGATTACAACAAATCAAGAGAATGGATTTGAAGTTGGAATGGGAGTTTCAATTTCTGGATTGACATTTTCTTGTCCCTCTGGTCCAGGAATTGTTACATATCCGAGTGGAAATAATGGATATGTTTTTAATGTAAAAACGACTCCAACTACTTATCAGTTTTCAGCATACGTTGGAACTTCTACATTACCTCACACTTATAACTCTGGGGGAACTGTAAAATTAAATTTAATACGTCCATATGATGGGGAAGTCATATATTTTGATTTATTATATTATACCGTCGGAAAAGTTGTAGTTGGATCTGGTGGAACTGGATATACTACAACACCAACAATCACAATTAGCGATCCAAGCACTTCTGGAACTTGGGGTGTTCCTGCACAAGCAGTAGCAGAAATACGAAATGGAACAATTACAAATATTGAATTGGTTTCAAGTGGAAGGGGATATACTTCAGTTCCTACAGTTACAATTAGTTCTCCTGATGTGGGAATAAATACAGCAACTGCAACTGTACAATTAATACCAACATATTATACCATTCAAAGTTCGACTCCAATTTCTGCTGGTATTTGCACAATTACAATCAATGAAAATGTTCCTTATGCTGTAGGTGCTGGTGCTTCAGTTCCATTCTTTAAACAAAGTAGAATTCTTGCATCTGGGCACGCTTTTGAATATATTGGTTCTGGAACTGATATTACAACTGCTCTTCCTTCTGCTGGTGGTGTGCCAATTCAAGATAATGAGGTTGATATGAGAAATGGTGGTCTTGTAGTTTATACAAGTACAGATCAAGCAGGCAATTTCCGAATTGGTGATGGAGTTGCCATTAATCAAACTACAGGAACAATTTCAGGAACATTTTACTCCAAGAGTTTGTTTTCAACTTTAACCCCATTCATTCTAGCACTAGGAGGAGATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
df57bdb67375444267b417f2703733bec6d6d21ade807e6f838a19602482925e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6433
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50