Protein

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Genbank accession
YP_010668622.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MKGVKIKESSEKISGELMEVGLELAKESGLFNHDPVIRINGVQLVGELVENPGRIRAPGIRRKDSRENTWVDENHPVMFKRMQDVKWYKFYVEKDKVLYATEGTNIQLSHNFIFRNCGDTPIGERAIFMIGCDITSDYLHIDAGSLLDRVRYKGVSLTVKSSQLSNVSMTIARVKIEKSIFKDINADCYDKLDVENSHISGCYVDGWKEVTISDSNIVRYGQWYSIRADNFEGPVGDSTLTLKNFKATSDKQLWVNEAANVESLHRAHFGTFNGLTDIEFIRLKNNHILLGSSYSFSLEKLEAAREKVVQGCSEDKDVSTLFKLYTGSIFKPGNENYAIVKKRFINFITSIIEKVKLFQLIDILNSSRS
Physico‐chemical
properties
protein length:369 AA
molecular weight: 41892,26600 Da
isoelectric point:7,63020
aromaticity:0,09485
hydropathy:-0,31924

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010668622.1
1 369
Domain Start End Length (AA) Confidence
N-terminal 1 14 14 0,0235
Central domain 15 213 200 0,3150
C-terminal 214 369 155 0,9121
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-14
Central
15-213
C-terminal
214-369

Taxonomy

  Name Taxonomy ID Lineage
Phage Aeromonas phage D3
[NCBI] 		2593327 Uroviricota > Caudoviricetes > Chimalliviridae > Ludhianavirus D3 >
Host Aeromonas hydrophila
[NCBI] 		644 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Aeromonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010668622.1 [NCBI]
Genbank nucleotide accession
NC_070957 [NCBI]
CDS location
range 143109 -> 144218
strand +
CDS
ATGAAAGGTGTGAAGATAAAGGAGTCTTCAGAAAAGATTTCCGGGGAGTTGATGGAGGTAGGTCTGGAACTCGCTAAAGAGTCCGGATTGTTCAACCACGACCCTGTGATCAGGATCAATGGTGTCCAGTTAGTCGGTGAACTGGTGGAAAATCCGGGAAGGATTCGAGCTCCAGGAATTCGACGTAAGGACAGTAGAGAGAACACCTGGGTTGATGAAAATCATCCGGTGATGTTCAAACGGATGCAAGACGTCAAGTGGTACAAGTTCTATGTGGAGAAGGACAAAGTACTTTATGCCACCGAGGGGACCAATATCCAGCTTTCCCACAATTTCATCTTCCGTAATTGTGGTGACACGCCGATTGGTGAACGTGCGATCTTTATGATCGGTTGTGATATAACCTCCGACTATCTCCACATCGACGCCGGGTCACTCCTGGATCGTGTCCGGTACAAGGGTGTGTCACTGACAGTGAAATCCAGTCAGTTGTCGAATGTCTCTATGACCATCGCTCGGGTCAAGATAGAGAAATCCATCTTCAAGGATATCAACGCTGACTGTTACGACAAATTGGATGTGGAAAACTCCCACATCTCTGGTTGTTACGTGGATGGCTGGAAAGAGGTAACGATCTCTGACAGCAACATCGTGCGGTATGGACAGTGGTACAGCATCCGTGCCGATAACTTTGAAGGTCCGGTTGGTGATTCCACACTCACCTTGAAGAACTTCAAGGCTACAAGTGATAAACAACTCTGGGTCAACGAAGCCGCTAACGTCGAGTCTCTCCATCGCGCCCACTTTGGGACATTTAATGGACTGACAGACATTGAGTTCATTCGACTGAAGAATAACCATATACTGCTCGGGAGTTCCTACTCTTTCTCTCTTGAGAAATTGGAGGCTGCCAGGGAAAAGGTTGTTCAGGGTTGCAGCGAAGATAAGGACGTGTCTACACTGTTCAAGTTGTACACTGGCTCTATCTTCAAGCCGGGTAATGAGAACTATGCAATCGTTAAGAAACGTTTCATTAACTTCATCACCTCGATCATCGAGAAGGTAAAACTGTTCCAACTGATCGACATCCTCAACTCGTCCCGTAGTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
58fb1dfb4e88daf367d0969b13c0fd3018bb5c87676f273f3e20f4c348ec8e9e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5249
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Aeromonas hydrophila bacteriophage D3 Rai,S., Tyagi,A., Kumar,N. and Singh,N. 2020-06-10 — GenBank