Protein

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Genbank accession
XOD41093.1 [GenBank]
Protein name
putative long tail fiber protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MPKKTTAIPSIQFYRTNTRGAAPAASDLKEGELALNLADGQLFAKGTSTIASIGLPSAADAVTNYRITAKELVSTGASTINGTLTVGTTGSGNSNLNFASPVGTGQIYFNTAGQFVINAVGTSTGTTATIYIRPVTSSSTNQTIFRPDGLVDLPKLNVQGISAFRADMTLQGSLFTNKAATFGSDTGQNKIILDPTVTNPVIRFTGTNSADVKAQIFGMAQAGANTALQMRVGSDATRDMNLMTDGTVSAYALQSRNNARILASDTTNWTSIVLADSNNAERGILFADKDGVIGLRNRNGEIIAWNQSNILHIQKGSLNVGYNAGGDQNGNDLYTKGALFNKGYLEFYGNNIAANTSRSINMLKSIFAGTPWGTQVYAERTSDGFINQVFQVSANFGTAGSKDDTNNSWFVMRHDGLFSIPGNINVNGAQESFFAGDISANNVKIRSDRTVKKNIKSIDNALDKIMGLDGSTYLDEHNNVSAGLMAQDVQEVLPEAVTEDTSGLLRLNYNAVIGLLVNAVKELREEVKQLRGE
Physico‐chemical
properties
protein length:533 AA
molecular weight: 56672,59510 Da
isoelectric point:6,05320
aromaticity:0,07129
hydropathy:-0,20544

Domains

Domains [InterPro]
DC_0000
STR
3–533
DC_0000
IPR030392
CHP
447–498
IPR030392 Coil
IPR030392
CHP
447–533
IPR030392
XOD41093.1
1 533
Architecture
STR
STR 3-533
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XOD41093.1
1 533
Domain Start End Length (AA) Confidence
N-terminal 1 13 13 0,7459
Central domain 14 212 200 0,0790
C-terminal 213 533 320 0,9290
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-13
Central
14-212
C-terminal
213-533

Taxonomy

  Name Taxonomy ID Lineage
Phage Serratia phage WSPA
[NCBI] 		3384840 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Serratia marcescens
[NCBI] 		615 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XOD41093.1 [NCBI]
Genbank nucleotide accession
PQ600363 [NCBI]
CDS location
range 124144 -> 125745
strand -
CDS
ATGCCAAAGAAGACTACTGCTATTCCAAGCATCCAATTTTATAGAACAAATACTCGAGGAGCTGCGCCAGCAGCTTCTGATTTAAAAGAAGGCGAGTTAGCACTTAACTTAGCGGACGGGCAACTGTTTGCCAAAGGAACAAGTACTATAGCTTCTATCGGTTTACCTAGTGCAGCCGATGCTGTCACAAATTATCGTATTACAGCAAAAGAACTAGTTTCAACAGGTGCATCTACAATCAATGGAACACTTACTGTGGGCACTACAGGGTCAGGTAACTCCAATTTGAACTTTGCATCCCCTGTTGGAACAGGACAAATCTATTTCAACACGGCAGGTCAATTCGTTATTAATGCAGTAGGTACTTCTACCGGAACTACCGCTACAATTTATATTCGTCCTGTTACTTCAAGTTCAACAAACCAGACAATATTTAGACCTGATGGTCTTGTAGATTTGCCTAAGCTTAATGTCCAAGGTATTTCTGCTTTTAGAGCTGACATGACTTTACAAGGCAGTTTATTCACTAACAAAGCTGCTACATTTGGTTCTGATACTGGTCAAAACAAAATCATTTTAGATCCTACAGTGACAAACCCTGTTATTCGTTTCACTGGAACTAATAGTGCTGATGTCAAGGCTCAAATTTTTGGTATGGCCCAAGCAGGTGCTAATACAGCATTACAAATGCGTGTCGGGTCTGATGCAACCAGAGATATGAATTTGATGACCGATGGCACAGTGAGTGCATATGCATTACAATCTCGTAATAATGCGCGTATTTTAGCATCAGATACTACAAACTGGACATCTATTGTATTGGCAGATTCTAATAATGCAGAGCGCGGTATTTTATTTGCAGACAAAGATGGTGTTATTGGCCTTAGAAATAGAAACGGTGAAATTATTGCTTGGAATCAAAGCAATATATTACATATCCAAAAAGGTTCATTGAACGTAGGTTATAACGCAGGTGGTGATCAAAACGGGAATGACCTATACACAAAAGGTGCTTTATTCAATAAAGGATACTTAGAATTTTACGGCAACAATATCGCAGCGAATACTTCAAGATCTATTAATATGTTGAAGAGTATCTTTGCCGGAACTCCTTGGGGTACACAAGTTTATGCAGAAAGAACATCTGATGGATTCATAAATCAAGTTTTCCAAGTTTCAGCAAACTTTGGCACTGCTGGCAGCAAAGATGACACTAATAACTCTTGGTTTGTTATGCGTCATGACGGTTTGTTCTCTATACCCGGCAATATAAATGTTAACGGTGCACAAGAATCATTTTTTGCCGGAGATATTAGTGCAAACAACGTTAAAATTCGTTCTGATAGAACAGTTAAAAAGAACATTAAATCTATTGATAATGCATTAGATAAAATAATGGGCTTGGATGGATCTACATATCTTGATGAACATAATAACGTATCAGCTGGTCTGATGGCGCAGGACGTCCAAGAGGTGCTTCCAGAAGCTGTGACTGAAGATACTAGTGGTCTTTTACGTTTGAACTATAACGCCGTTATAGGGCTCCTAGTGAATGCTGTTAAAGAACTTCGTGAAGAAGTTAAACAACTGAGAGGTGAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
7d5b0171f37b9556a69b9563c58d52920c884ed140b8328ed42f5a046eb663e9
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7129
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50